View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_low_4 (Length: 527)

Name: NF4562_low_4
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_low_4
NF4562_low_4
[»] chr4 (7 HSPs)
chr4 (13-362)||(33393386-33393735)
chr4 (17-166)||(33125364-33125510)
chr4 (359-418)||(51834991-51835050)
chr4 (95-165)||(42502249-42502319)
chr4 (359-397)||(50341858-50341896)
chr4 (359-396)||(7852536-7852573)
chr4 (359-396)||(50427066-50427103)
[»] chr7 (2 HSPs)
chr7 (359-396)||(43234867-43234904)
chr7 (359-418)||(44537418-44537477)
[»] chr3 (3 HSPs)
chr3 (298-362)||(35407949-35408013)
chr3 (378-418)||(29083869-29083909)
chr3 (313-361)||(52516200-52516248)
[»] chr2 (1 HSPs)
chr2 (31-83)||(19984782-19984834)
[»] chr6 (1 HSPs)
chr6 (359-398)||(31855131-31855170)
[»] chr8 (1 HSPs)
chr8 (358-396)||(3146116-3146154)
[»] chr5 (4 HSPs)
chr5 (359-396)||(7968467-7968504)
chr5 (359-395)||(9276573-9276609)
chr5 (323-355)||(30700536-30700568)
chr5 (323-355)||(30734984-30735016)
[»] chr1 (1 HSPs)
chr1 (359-396)||(2864219-2864256)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 33393386 - 33393735
Alignment:
Q  13 agcaaagggaggttgtcggaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttttgggatatgtaaaaaatggatattcagac 112  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| |   |||||||| ||||||  |    
T  33393386 agcaaagggaggttgccagaaatataagattagacataaggtttgaagcatgagaatagactgagactttttgggatgt---aaaaatgggtattcaagc 33393482  T
Q  113 ttaatgggtcgggctaacatggacttccatgagaataggacttcgtgttagtgaatgatgaactgtttttatagcggcgtctaagataaggattcaagat 212  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||    
T  33393483 ttaatgggtcgagctaacatggacctccattagaataggacttcttgttagtgaatgatgaattgtttttatggtggcgtctaagataaggatacaagat 33393582  T
Q  213 tatct-atacacatggacc-atgatataccaaa-tctttcaacaactaatattgttttgagtatggaaagatgaattgtttgtatgtatattggtctatg 309  Q
    ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  33393583 tatcagatacacatggacccatgatataccaaagtctttcaacaactaatattgtttttagtatggaaagatgaattgttagtacatatattggtctatg 33393682  T
Q  310 caattaaatagaaaaacaagaacatagagataatattgttgggattaagtttc 362  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33393683 caattaaatagaaaaacaagaacatagagataatattgttgagattaagtttc 33393735  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 33125364 - 33125510
Alignment:
Q  17 aagggaggttgtcggaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttttgggatatgtaaaaaatggatattcagacttaa 116  Q
    |||| ||||||| | ||||||||||||| ||| ||||||||||||||   |||| |||||||||||||| ||| |   |||||||| || |||| |||||    
T  33125364 aaggtaggttgttgaaaatataagattaaacacaaggtttgaagcattataataacctaagactttttgagatgt---aaaaatgggtaatcaggcttaa 33125460  T
Q  117 tgggtcgggctaacatggacttccatgagaataggacttcgtgttagtga 166  Q
    ||||||  ||||||||||| | |||| |||||| || ||| |||||||||    
T  33125461 tgggtcaagctaacatggaatgccataagaataagatttcatgttagtga 33125510  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 51834991 - 51835050
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagtatattgggggcactcgttaaca 418  Q
    ||||||| |||||||||||||||||||| ||||||||| | | |||  ||||||||||||    
T  51834991 tttcattaaaaatttactatttaaagtgtttaaagagtgtctcgggaacactcgttaaca 51835050  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 42502249 - 42502319
Alignment:
Q  95 aaaaatggatattcagacttaatgggtcgggctaacatggacttccatgagaataggacttcgtgttagtg 165  Q
    |||||||| ||| | ||||||||||| || |||||||| || | |||||||||||| | ||||||||||||    
T  42502249 aaaaatgggtatgcggacttaatgggacgagctaacatagattgccatgagaatagaatttcgtgttagtg 42502319  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 50341896 - 50341858
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagta 397  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  50341896 tttcatttaaaatttactatataaagtgcttaaagagta 50341858  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 7852573 - 7852536
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  7852573 tttcattaaaaacttactatttaaagtgcttaaagagt 7852536  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 50427066 - 50427103
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  50427066 tttcattaaaaatttactatttaaagtgtttaaagagt 50427103  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 43234867 - 43234904
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43234867 tttcattaaaaatttactatttaaagtgcttaaagagt 43234904  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 44537418 - 44537477
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagtatattgggggcactcgttaaca 418  Q
    ||||||| |||| |||||||||||||||||||||||||     |||||||||||||||||    
T  44537418 tttcattaaaaacttactatttaaagtgcttaaagagtgccccgggggcactcgttaaca 44537477  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 35408013 - 35407949
Alignment:
Q  298 tattggtctatgcaattaaatagaaaaacaagaacatagagataatattgttgggattaagtttc 362  Q
    ||||||||| ||||||||||||   ||| ||||| ||| ||||||||||||||| ||||||||||    
T  35408013 tattggtctttgcaattaaataaggaaataagaatataaagataatattgttggaattaagtttc 35407949  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 29083909 - 29083869
Alignment:
Q  378 tttaaagtgcttaaagagtatattgggggcactcgttaaca 418  Q
    |||||||||||||||||||||  ||| ||||||||||||||    
T  29083909 tttaaagtgcttaaagagtatcctggaggcactcgttaaca 29083869  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 52516248 - 52516200
Alignment:
Q  313 ttaaatagaaaaacaagaacatagagataatattgttgggattaagttt 361  Q
    ||||| |||||||||||||   ||||||||||||||| |||||||||||    
T  52516248 ttaaaaagaaaaacaagaattgagagataatattgttaggattaagttt 52516200  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 19984782 - 19984834
Alignment:
Q  31 gaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttt 83  Q
    |||||||||| ||||||| || |||||||||||| |||||||| |||||||||    
T  19984782 gaaatataaggttagacaaaatgtttgaagcatgagaatagcccaagactttt 19984834  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 31855131 - 31855170
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagtat 398  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  31855131 tttcattaaaaacttactatttaaagtgcttaaagagtat 31855170  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 3146116 - 3146154
Alignment:
Q  358 gtttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  3146116 gtttcattaaaaacttactatttaaagtgcttaaagagt 3146154  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 7968467 - 7968504
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  7968467 tttcattaaaaacttactatttaaagtgcttaaagagt 7968504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 9276609 - 9276573
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagag 395  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9276609 tttcattaaaaacttactatttaaagtgcttaaagag 9276573  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 30700568 - 30700536
Alignment:
Q  323 aaacaagaacatagagataatattgttgggatt 355  Q
    ||||||||||| |||||||||||||||||||||    
T  30700568 aaacaagaacaaagagataatattgttgggatt 30700536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 30735016 - 30734984
Alignment:
Q  323 aaacaagaacatagagataatattgttgggatt 355  Q
    ||||||||||| |||||||||||||||||||||    
T  30735016 aaacaagaacaaagagataatattgttgggatt 30734984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 2864219 - 2864256
Alignment:
Q  359 tttcattcaaaatttactatttaaagtgcttaaagagt 396  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  2864219 tttcattaaaaacttactatttaaagtgcttaaagagt 2864256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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