View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4562_low_5 (Length: 473)
Name: NF4562_low_5
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_5 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 17749637 - 17749184
Alignment:
| Q |
12 |
atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17749637 |
atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga |
17749538 |
T |
|
| Q |
112 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17749537 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac |
17749438 |
T |
|
| Q |
212 |
tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17749437 |
tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaaga |
17749338 |
T |
|
| Q |
312 |
attgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaaccta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17749337 |
attgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaaccta |
17749238 |
T |
|
| Q |
412 |
aacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtcc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
17749237 |
aacctattcaatctaaagagtgtgtcgctggaaaaatgcccgatgttgatgtcc |
17749184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 465
Target Start/End: Complemental strand, 19050957 - 19050504
Alignment:
| Q |
12 |
atcatcaaagtgtgtgtttcttaaagttagagatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaaga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19050957 |
atcatcaaagtgtgtgtttcttaaagttagaattgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggtgcttaaactaaga |
19050858 |
T |
|
| Q |
112 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19050857 |
agaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaac |
19050758 |
T |
|
| Q |
212 |
tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19050757 |
tgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaaga |
19050658 |
T |
|
| Q |
312 |
attgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaaccta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19050657 |
attgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaaccta |
19050558 |
T |
|
| Q |
412 |
aacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgatgtcc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
19050557 |
aacctattcaatctaaagagtgtgtcgctggaaaaatgcccgatgttgatgtcc |
19050504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 45 - 435
Target Start/End: Complemental strand, 27464638 - 27464248
Alignment:
| Q |
45 |
tgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacct |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27464638 |
tgacattttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttcttagactaacaagaatggaggggggatggagaaacatcatacct |
27464539 |
T |
|
| Q |
145 |
gatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgctt |
244 |
Q |
| |
|
|| |||||||| || |||| |||||||||||| |||| |||||| | || || |||||||| ||| ||||||||||||||| |||||| || || |
|
|
| T |
27464538 |
gagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagttgcactgcctcattgacactcagcatactgatt |
27464439 |
T |
|
| Q |
245 |
ctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctct |
344 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
27464438 |
ctcaatttccaaatgtcttctccaagttggttgtactagatctttggaacctagaaaatttggaagaattgttcaatggtcctgtttcctttgactctct |
27464339 |
T |
|
| Q |
345 |
aaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtg |
435 |
Q |
| |
|
||||| |||||||||||||||||||||| | || |||||||||| ||||||||||||||||| |||||||| | |||| | ||||||||| |
|
|
| T |
27464338 |
aaacaatttagagaagttgtccatcaagaactgtgaacatttgcagagcttatttaagtgcaagctaaacctctgcaatttgaagagtgtg |
27464248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 49 - 461
Target Start/End: Original strand, 27909638 - 27910050
Alignment:
| Q |
49 |
attttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgata |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27909638 |
attttcctatctgaaacaacactcaagtactgtatgcaagaagcagaggttattagactaagaagaatcgaggggggatggagaaatatcatacctgaga |
27909737 |
T |
|
| Q |
149 |
ttgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctca |
248 |
Q |
| |
|
| |||| ||||| || |||||||||||| |||||||||||||||| || ||||||||| | | |||||| ||||||||||||||| | ||||| |
|
|
| T |
27909738 |
tgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgccttattgacactaagcatgtcatctctca |
27909837 |
T |
|
| Q |
249 |
agtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaa |
347 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||| | | | ||| | || |||||| |||||||||||||||| |||||||| ||||||||||| || |
|
|
| T |
27909838 |
agtatcaaaagtcttctccaagttggttgtactagagc-tcgaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaa |
27909936 |
T |
|
| Q |
348 |
cagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaaca |
447 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
27909937 |
cagtttagaggatctgtccatcagtaattgcaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtcgttggaaaga |
27910036 |
T |
|
| Q |
448 |
tgcccgatgatgat |
461 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
27910037 |
tgcccgatgttgat |
27910050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 436
Target Start/End: Original strand, 28129791 - 28130177
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||| ||||| ||| ||||||||||| || |
|
|
| T |
28129791 |
ttttcctaactgaaagaacactcaagtattgtatgcaagaagcagaggttcttgcactaagaagaatcgagggggaatggaaaaacatcatacctgagat |
28129890 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| || || ||||||||| | | ||||||||||||||||||||| | || |||||| |
|
|
| T |
28129891 |
tgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcattgacactaagcacactgaatctcaa |
28129990 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
|| |||| |||||||||| ||||||||||||||| ||||||| | ||| |||||| |||||||||||||||| |||||||| ||||||||||| || | |
|
|
| T |
28129991 |
gtgtcaaaagtcttctccaagttggttgtactagaactttggaaccaagataatttggaagaattgttcaatggtcctctttcctttgactctctgaaaa |
28130090 |
T |
|
| Q |
350 |
gtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt |
436 |
Q |
| |
|
||||| || |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130091 |
gtttaaaggagttgtccatcagtgattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgt |
28130177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 51 - 437
Target Start/End: Original strand, 28079246 - 28079632
Alignment:
| Q |
51 |
tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatatt |
150 |
Q |
| |
|
||||||||| ||||||||||| |||||||| | |||||||||||||| |||| ||| || ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
28079246 |
tttcctatccaaaacaacactcgagtactgttttcaagaagcagaggttcttagacttggaggaatcgaaggggggtggagaaatatcatacctgatatt |
28079345 |
T |
|
| Q |
151 |
gttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaag |
250 |
Q |
| |
|
||||| || |||| |||||||||||| |||||||||||||||| || ||||||||| | | ||||||||||||||||||||| | || ||||||| |
|
|
| T |
28079346 |
gttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgcctcattgacactaagcacactgagtctcaag |
28079445 |
T |
|
| Q |
251 |
taccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaacag |
350 |
Q |
| |
|
| |||| |||||||||| ||||||||||||| | || | | || |||||| |||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
28079446 |
tgtcaaaagtcttctccaagttggttgtactaaagctcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacag |
28079545 |
T |
|
| Q |
351 |
tttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtc |
437 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28079546 |
tttagagaagttgtccatcagtgattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagtgtgtc |
28079632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 50 - 431
Target Start/End: Original strand, 28143719 - 28144100
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || |||||||||||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||| || |
|
|
| T |
28143719 |
ttttcctaactgaaacaacactcaagtattgcatgcaagaagcagaggttcttagactaagaagaatcgagggggaatggaaaaacatcatacctgagat |
28143818 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| || || ||||||||| | | |||||||||||| |||||||| | || |||||| |
|
|
| T |
28143819 |
tgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcattgatactaagcacactgaatctcaa |
28143918 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
|| |||| |||||||||| ||||||||||||| | ||||||| | | | |||||| |||||||||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
28143919 |
gtgtcaaaagtcttctccaagttggttgtactaaaactttggaaccaacataatttggaagaattgttcaatggtcctctttcctttgactctctgaact |
28144018 |
T |
|
| Q |
350 |
gtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagag |
431 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28144019 |
ttttagagaagttgtccatccaagattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagag |
28144100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 42 - 461
Target Start/End: Original strand, 27962701 - 27963120
Alignment:
| Q |
42 |
agatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcata |
141 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| |||||||||| | |||||||||||| | ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27962701 |
agatgatattttcctatccgaaacatcacacaagtactgtttgcaagaagcagagtttcttggactaagaagaatggaggggggatggagaaatatcata |
27962800 |
T |
|
| Q |
142 |
cctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattg |
241 |
Q |
| |
|
||||| |||||||| || | || |||||||||||| |||| |||||| ||| || | ||||||| | || ||||||||||||| ||||||| ||| |
|
|
| T |
27962801 |
cctgagattgttcctatggagcatggtatgaatgatctagtcgagctttcattgggatccaattcacaattacgttgcctcattgacagtaagcattttg |
27962900 |
T |
|
| Q |
242 |
cttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactc |
341 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||| ||||| ||| ||| |||||||||||| |||||||||||||||| ||| | || |||||||| |
|
|
| T |
27962901 |
aatctcaagtaacaaaagtcttctccaagttggttggcctagaacttaggaacctagaaaatttggaagaattgttcaatggtcctttgtcctttgactc |
27963000 |
T |
|
| Q |
342 |
tctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctg |
441 |
Q |
| |
|
| | |||||||||||||| | ||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27963001 |
tttgaacagtttagagaatctttccattgaagattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcattg |
27963100 |
T |
|
| Q |
442 |
gaaacatgcccgatgatgat |
461 |
Q |
| |
|
||| |||||||||| |||| |
|
|
| T |
27963101 |
gaaggatgcccgatgttgat |
27963120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 43 - 461
Target Start/End: Original strand, 11408628 - 11409046
Alignment:
| Q |
43 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
142 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||| ||||| ||| || ||||||| |||| |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11408628 |
gatgagattttcctatccaaaacaacactcatgtattgtatgcaaaaatcagaggttcttagactaggaagaatcgtgggggaatggagaaatatcatac |
11408727 |
T |
|
| Q |
143 |
ctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgc |
242 |
Q |
| |
|
|||| || ||||| || ||||||||||||||||| ||||||||||| | ||| || ||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
11408728 |
ctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaactaaaatgcctcattgacactatgcataccgg |
11408827 |
T |
|
| Q |
243 |
ttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggc-tagaaaatttgaaagaattgttcaatggccctctttcttttgactc |
341 |
Q |
| |
|
| ||||||| |||| ||||||| || ||||||||||||| | ||| | ||| | || |||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
11408828 |
atatcaagtatcaaaagtcttctgcaagttggttgtactaaagctt-gaaggaatggataatttggaagaattgttcaatggctctctttcctttgactc |
11408926 |
T |
|
| Q |
342 |
tctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctg |
441 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | || |
|
|
| T |
11408927 |
tctgaacagtttagagaagctgtccatcaaggattgtacaaatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgttgttg |
11409026 |
T |
|
| Q |
442 |
gaaacatgcccgatgatgat |
461 |
Q |
| |
|
||| |||||||||| |||| |
|
|
| T |
11409027 |
aaaagatgcccgatgttgat |
11409046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 50 - 461
Target Start/End: Original strand, 27998431 - 27998830
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
27998431 |
ttttcctatctaaaacaacactcaaggactgtatgcaagaagcagaggttcttaagataaatagaatggaggggggagggagaaatatcatacctgagat |
27998530 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||| || ||| |||||||||||| ||||||||||||| || || ||||||||| | | |||||||||||||||||||||| || |
|
|
| T |
27998531 |
gattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaattacaatgcctcattgacactaagcatactgg------- |
27998623 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
||| |||||||||| ||||||||| ||||| ||||||| ||||| |||||| ||||||| | |||||| |||||||| ||||||||||| |||| |
|
|
| T |
27998624 |
-----aaaagtcttctccaagttggttgtgctagaactttggaacctagataatttggaagaattatgcaatggtcctctttcctttgactctctgaaca |
27998718 |
T |
|
| Q |
350 |
gtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatg |
449 |
Q |
| |
|
||||||||||| ||| ||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| |
|
|
| T |
27998719 |
gtttagagaagctgtacatcatcaattgtaaacatttgaaaagcttatttaagtgcaaactaaacctattcaatctaaagagcgtgttgctggaaggatg |
27998818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 50 - 432
Target Start/End: Complemental strand, 28492626 - 28492244
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
28492626 |
ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttggactaagaaggatggaggggggatggagaaatatgatgcctgagat |
28492527 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaat-ttatttcacaactgcggtgcctcattgacactaagcatattgcttctca |
248 |
Q |
| |
|
|||||| || |||| |||||||||||| |||| ||||| | || | | |||||||||||| | ||||||||||||||||| |||| || |||| |
|
|
| T |
28492526 |
tgttcctatggatcatggtatgaatgatctagtcaagctt-agtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctct |
28492428 |
T |
|
| Q |
249 |
agtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaa |
347 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||||||| | | | ||| | || |||||| ||||||||||||| || |||||||| ||||||||||| || |
|
|
| T |
28492427 |
agtatcaaaagtattctccaagttggttgtactagagc-tcgaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaa |
28492329 |
T |
|
| Q |
348 |
cagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagt |
432 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||| ||| ||||||| |||||||| ||||||| | ||||||||||||| |
|
|
| T |
28492328 |
cagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttgagtgcaacataaacctctgcaatctaaagagt |
28492244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 50 - 461
Target Start/End: Original strand, 28177877 - 28178279
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||||||| |||||||| ||| ||||||| || |
|
|
| T |
28177877 |
ttttcctatctgaaacaacactcaagtattgtatgcaagaagcagaggttcttgaactaggaagaatcgagggggggtggagaaacatcgtacctgagat |
28177976 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||||| || |||| |||||||||||| || | ||||||| || || ||||||||| | | |||||||||||||||||| ||||| | |
|
|
| T |
28177977 |
tgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaattacagtgcctcattgacactaa---------ttctcca |
28178067 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
|| |||| |||||||||| ||||||||||||| | || | | || ||||| |||||||||||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
28178068 |
gtttcaaaagtcttctccaagttggttgtactaaagctcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaaca |
28178167 |
T |
|
| Q |
350 |
gtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatg |
449 |
Q |
| |
|
||||||||||| |||||||||| || || |||||||| |||||||||||||||||||||||||||| | ||||||||||||| | || ||||| ||| |
|
|
| T |
28178168 |
gtttagagaagctgtccatcaatgaatgtaaacatttaaaaagcttatttaagtgcaacctaaacctctgcaatctaaagagtctttcattggaagaatg |
28178267 |
T |
|
| Q |
450 |
cccgatgatgat |
461 |
Q |
| |
|
||||||| |||| |
|
|
| T |
28178268 |
cccgatgttgat |
28178279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 244 - 461
Target Start/End: Original strand, 28047452 - 28047669
Alignment:
| Q |
244 |
tctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctc |
343 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||| ||||||||| |||||||||||| ||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
28047452 |
tctcaagtatcaacggtcttctccaagttggttgaacttcatctttggaacctagaaaatttggaagaattgtgcaatggtcctctttcctttgactctc |
28047551 |
T |
|
| Q |
344 |
taaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgga |
443 |
Q |
| |
|
| |||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
28047552 |
tgaacagtttagaggagctgtccatcaaggattgtaaacatttgaaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtatcgttgga |
28047651 |
T |
|
| Q |
444 |
aacatgcccgatgatgat |
461 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
28047652 |
aggatgcccgatgttgat |
28047669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 50 - 432
Target Start/End: Complemental strand, 28472585 - 28472203
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
28472585 |
ttttcctatgtgaaacaacactcaagtattgtatgcaagaagcagaggttcttagactaagaaggatggaggggggatggagaaatatgatgcctgagat |
28472486 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaat-ttatttcacaactgcggtgcctcattgacactaagcatattgcttctca |
248 |
Q |
| |
|
|||||| || | || |||||||||||| |||| |||||| | || | | |||||||||||| | ||||||||||||||||| |||| || |||| |
|
|
| T |
28472485 |
tgttcctatggaccatggtatgaatgatctagtcgagctt-agtttgagtagtatttcacaactacaatgcctcattgacactaaacatactgaatctct |
28472387 |
T |
|
| Q |
249 |
agtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaa |
347 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||||||| | | | ||| | || |||||| |||||||||||| || |||||||| ||||||||||| || |
|
|
| T |
28472386 |
agtatcaaaagtattctccaagttggttgtactagagc-tcgaaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaa |
28472288 |
T |
|
| Q |
348 |
cagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagt |
432 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||| ||| ||||||| |||||||| ||||||| | ||||||||||||| |
|
|
| T |
28472287 |
cagtttagagaatctgtccattgaggattgtaaacatttgaaaatcttatttgagtgcaacataaacctctgcaatctaaagagt |
28472203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 50 - 467
Target Start/End: Complemental strand, 28513607 - 28513190
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||| ||| | || | |||||||||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
28513607 |
ttttcctatctgaaacaacactcaggtattgtatgcaagaagctgagattctaagactaagaagaatggaggggggatggagaaatatgattcctgaaat |
28513508 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||||| || || |||||||||||| |||| |||||| || || ||||||||||| | |||||||||||||| || ||||| | |||||| |
|
|
| T |
28513507 |
tgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctcattgacaccaaacatatcgaatctcaa |
28513408 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggagg-ctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaac |
348 |
Q |
| |
|
||| |||| |||||||||| ||||| ||||||||| | | | ||| | || |||||| ||||||||||||| || |||||||| ||||||||||| ||| |
|
|
| T |
28513407 |
gtatcaaaagtcttctccaagttggctgtactagaac-tcgaaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaac |
28513309 |
T |
|
| Q |
349 |
agtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacat |
448 |
Q |
| |
|
||||||||||| ||||||| || |||| |||| |||| ||| |||||| |||||||| ||||||| | ||||||||||||| | || ||||| || |
|
|
| T |
28513308 |
agtttagagaatctgtccattgagaattgtaaacgtttgaaaatcttattcgagtgcaacataaacctctgcaatctaaagagtctttcattggaacgat |
28513209 |
T |
|
| Q |
449 |
gcccgatgatgatgtccat |
467 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
28513208 |
gcccgatgttgatctccat |
28513190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 50 - 278
Target Start/End: Original strand, 27952010 - 27952238
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||||||| | ||||||||| |||| ||||||| |||| |
|
|
| T |
27952010 |
ttttcctatctgaaacaacactcaagtactgtatgcaaacagctgagattcttaaactaagaagaatacaaaggggatggataaatctcatacccaatat |
27952109 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||| || || |||||||||||| || ||| ||||||| || || | ||||||||||| | || |||||||||||||||||||| | || |||| |
|
|
| T |
27952110 |
tgtttcgatgcatcaaggtatgagaaatatagctgagcttagtttgcattgcatttcacaacttcagttcctcattgacactaagcatacagattttcaa |
27952209 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgt |
278 |
Q |
| |
|
| ||||||| |||| |||| ||||||||| |
|
|
| T |
27952210 |
gaaccaaatttcttgtccaagttggttgt |
27952238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 28047273 - 28047396
Alignment:
| Q |
51 |
tttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatatt |
150 |
Q |
| |
|
||||||||| |||||||| || |||||||| | |||||||||||||| |||| ||| ||| |||| || || | |||||||||||||||||||||||| |
|
|
| T |
28047273 |
tttcctatccaaaacaacattcgagtactgtttgcaagaagcagaggttcttagacttagaggaattgaaaggtggtggagaaatatcatacctgatatt |
28047372 |
T |
|
| Q |
151 |
gttccgttgaatcaaggtatgaat |
174 |
Q |
| |
|
||||| ||| |||| ||||||||| |
|
|
| T |
28047373 |
gttcctttggatcatggtatgaat |
28047396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 18081418 - 18081253
Alignment:
| Q |
123 |
gggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctc |
222 |
Q |
| |
|
||||||||||||| |||| || || |||||||| | ||||||||||||||||| || |||||||| | || ||| | ||||||||| | || |||| |
|
|
| T |
18081418 |
gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctc |
18081319 |
T |
|
| Q |
223 |
attgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctt |
288 |
Q |
| |
|
|| ||| | | ||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
18081318 |
atatacattgaacatattgattctcaagtaccaactgtcttctccaagttggttgtactacatctt |
18081253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 27435029 - 27434905
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||| |||||||||||||||| | ||| ||| | |||||||||||||| |||| ||||||||| ||||| ||| |||||||||| ||||||| || || |
|
|
| T |
27435029 |
ttttcttatctgaaacaacactaaggtattgtctgcaagaagcagaggttcttagactaagaagcttcgagagggaatggagaaatctcatacccgagat |
27434930 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaat |
174 |
Q |
| |
|
|||| | || |||||||||||||| |
|
|
| T |
27434929 |
tgtttctatggatcaaggtatgaat |
27434905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 27773360 - 27773433
Alignment:
| Q |
217 |
tgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttg |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| ||| ||||||| |
|
|
| T |
27773360 |
tgcctcattgacactaagcatattggttctcaactaccaaatgttttctctttgttggttgtgctacatctttg |
27773433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 27401453 - 27401382
Alignment:
| Q |
216 |
gtgcctcattgacactaagcatattgcttctcaagtaccaaa---tgtcttctccatgttggttgtactaga |
284 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
27401453 |
gtgcctcatagacactaaacatattgattctcaagtaccaaatgttgtcttctccaagttggttgtactaga |
27401382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 26117350 - 26117270
Alignment:
| Q |
202 |
atttcacaactgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtacta |
282 |
Q |
| |
|
||||||||||| | |||||| | |||||||| |||||| |||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
26117350 |
atttcacaactacagtgccttgtagacactaaacatattaattctcaagtaccaattgttttctccaagttggttgtacta |
26117270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 26239614 - 26239528
Alignment:
| Q |
202 |
atttcacaactgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctt |
288 |
Q |
| |
|
||||||||||| | || ||| | |||||||| |||||| |||||||||||||| ||| ||||||| ||||||||||||| ||||| |
|
|
| T |
26239614 |
atttcacaactacagtaccttgtagacactaaacatattaattctcaagtaccaattgttttctccaagttggttgtactaaatctt |
26239528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 435
Target Start/End: Complemental strand, 26145354 - 26145121
Alignment:
| Q |
202 |
atttcacaactgcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaa |
301 |
Q |
| |
|
||||||||||| | |||||| | |||||||| |||||| |||||||||||||| ||| ||||| | ||||||||||||| | ||| ||| | ||| |
|
|
| T |
26145354 |
atttcacaactacagtgcctagtagacactaaacatattaattctcaagtaccaattgttttctctaagttggttgtactaaagcttgagagaatggaag |
26145255 |
T |
|
| Q |
302 |
atttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaa |
401 |
Q |
| |
|
|||| ||||||| | |||||| || | || |||||||| | |||| ||||||| || ||| || ||||| || || ||||||||||||| ||||| |
|
|
| T |
26145254 |
ctttggaagaattatgcaatggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaa |
26145155 |
T |
|
| Q |
402 |
gtgcaacctaaacctattcaatctaaagagtgtg |
435 |
Q |
| |
|
|||| |||||| || ||||||||||| |||| |
|
|
| T |
26145154 |
atgcagcctaaatctcagcaatctaaagactgtg |
26145121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 18031504 - 18031464
Alignment:
| Q |
220 |
ctcattgacactaagcatattgcttctcaagtaccaaatgt |
260 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18031504 |
ctcatagacactaaacatattgattctcaagtaccaaatgt |
18031464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 50 - 461
Target Start/End: Complemental strand, 8694956 - 8694545
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8694956 |
ttttcctttctcaaataacacttaagtactgtatgcaagcagcagaggttcttagactaagaagaatcgaggggggatggagaaatatcatacctgagat |
8694857 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
|||||| | |||| |||||||||||| ||||||||||| | ||| || ||||||||||| | |||||| | |||||||||||||||| |||||| |
|
|
| T |
8694856 |
tgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcatttcacaactacaatgcctcttagacactaagcatattgattctcat |
8694757 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
||| ||| ||||||||||| ||| |||||||||| ||| | | || |||||| ||||||||| |||||| |||||||| ||||||||||| || | |
|
|
| T |
8694756 |
gtatcaattgtcttctccaagttagttgtactagttctcaaaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaaaa |
8694657 |
T |
|
| Q |
350 |
gtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatg |
449 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||| |
|
|
| T |
8694656 |
gtttagagaagctgtacatcaaggattgtaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttgaaaagatg |
8694557 |
T |
|
| Q |
450 |
cccgatgatgat |
461 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8694556 |
tccgatgttgat |
8694545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 461
Target Start/End: Complemental strand, 9330538 - 9330120
Alignment:
| Q |
43 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| | | | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
9330538 |
gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac |
9330439 |
T |
|
| Q |
143 |
ctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgc |
242 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| | | ||||||| | || || |||| |||||| |||||||||||||||| ||||| || |
|
|
| T |
9330438 |
ctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattgacactacgcatactga |
9330339 |
T |
|
| Q |
243 |
ttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactct |
342 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9330338 |
atctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactct |
9330239 |
T |
|
| Q |
343 |
ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgg |
442 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
9330238 |
ttgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttag |
9330139 |
T |
|
| Q |
443 |
aaacatgcccgatgatgat |
461 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
9330138 |
aaggatgcccgatgttgat |
9330120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 43 - 461
Target Start/End: Complemental strand, 9384321 - 9383903
Alignment:
| Q |
43 |
gatgacattttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatac |
142 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| ||| | | | ||||||||| ||| |||||||| ||||||| |
|
|
| T |
9384321 |
gatgactttttcctatctgaaacaacactcaagtattgtatgcaagaatcagagggtattagattgtgtagaatcgagagggtgtggagaaacatcatac |
9384222 |
T |
|
| Q |
143 |
ctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgc |
242 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| | | ||||||| | || || |||| |||||| |||||||||||||||| ||||| || |
|
|
| T |
9384221 |
ctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattgacactacgcatactga |
9384122 |
T |
|
| Q |
243 |
ttctcaagtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactct |
342 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9384121 |
atctcaagtatcaaaagtcttctccaagttggttgtactagatcttaatgaattagaaaatttggaagaattgttcaatggtcctctttcctttgactct |
9384022 |
T |
|
| Q |
343 |
ctaaacagtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctgg |
442 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
9384021 |
ttgaacagtttagagaagctgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagcgtgtcgttag |
9383922 |
T |
|
| Q |
443 |
aaacatgcccgatgatgat |
461 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
9383921 |
aaggatgcccgatgttgat |
9383903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 9329914 - 9329826
Alignment:
| Q |
373 |
gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat |
461 |
Q |
| |
|
||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
9329914 |
gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat |
9329826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 9383697 - 9383609
Alignment:
| Q |
373 |
gattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaagagtgtgtcgctggaaacatgcccgatgatgat |
461 |
Q |
| |
|
||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
9383697 |
gattgtaaacatttgaaaagtttattcaagtgcaacataaacctattcaatctaaagagtgtgtcgttggaaagatgcccgatgttgat |
9383609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 26027476 - 26027162
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| ||||| ||| || ||||| || |||||||||||||| ||||| || |
|
|
| T |
26027476 |
ttttcctatctgaaacaacactcgagtattgtatgcaagaagcagaaattcttagactaacaaggattgagggagggtggagaaatatcatgcctgagat |
26027377 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatttatttcacaactgcggtgcctcattgacactaagcatattgcttctcaa |
249 |
Q |
| |
|
||||| || |||| |||||||||||| |||| |||||| || || ||||||||| | | || ||||||| ||||||||| || || |||||| |
|
|
| T |
26027376 |
tgttcatatggatcatggtatgaatgatctagtcgagctttctttgagatccatttcacaattacagtacctcattaacactaagcctactgaatctcaa |
26027277 |
T |
|
| Q |
250 |
gtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaaca |
349 |
Q |
| |
|
||| |||| |||||||||| |||| ||||||||||||||| | |||||||||||| |||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
26027276 |
gtatcaaaagtcttctccaagttgattgtactagatctttctaacctagaaaatttggaagaattgttcaatggtcctctttcctttgactctctcaaca |
26027177 |
T |
|
| Q |
350 |
gtttagagaagttgt |
364 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26027176 |
gtttagagaagttgt |
26027162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 430
Target Start/End: Original strand, 23797 - 24177
Alignment:
| Q |
50 |
ttttcctatctgaaacaacactcaagtactgtatacaagaagcagaggtgcttaaactaagaagaatcgaggggggatggagaaatatcatacctgatat |
149 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| ||| | | ||||| |||| |||||||||||||||| ||||||||||||| ||||||| | || |
|
|
| T |
23797 |
ttttcttatctgaagcaacactcaagtactgtatgcaaacaaccgaggttcttagactaagaagaatcgagacgggatggagaaatctcataccccagat |
23896 |
T |
|
| Q |
150 |
tgttccgttgaatcaaggtatgaatgatttagttgagcttgaattacaatt-tatttcacaactgcggtgcctcattgacactaagcatattgcttctca |
248 |
Q |
| |
|
|||| | || ||||||||||||| ||| ||||||| ||| | || | || ||||||||||| |||| |||| ||||||| ||| |||||| | || |
|
|
| T |
23897 |
tgtttctatggatcaaggtatgaaagatatagttgaactt-agtttgagttgcatttcacaacttcggtacctcgttgacacgaaggatattgtgttcca |
23995 |
T |
|
| Q |
249 |
agtaccaaatgtcttctccatgttggttgtactagatctttggaggctagaaaatttgaaagaattgttcaatggccctctttcttttgactctctaaac |
348 |
Q |
| |
|
|| ||| ||||| | |||| ||||||||||||| | | || | ||||||||| ||||| |||| ||||| || |||| ||||||| ||| || |
|
|
| T |
23996 |
aggaccgaatgttgtgtccaagttggttgtactaaaattggacagaatggaaaatttggaagaactgtttaatggtcccgtttcctttgactttctgaag |
24095 |
T |
|
| Q |
349 |
agtttagagaagttgtccatcaaggattgcaaacatttgcaaagcttatttaagtgcaacctaaacctattcaatctaaaga |
430 |
Q |
| |
|
| |||| ||||| | || ||||||||||| ||||||||||||||||| ||||| | | | | |||||| | ||||||||||| |
|
|
| T |
24096 |
aatttacagaagatatcaatcaaggattgtaaacatttgcaaagcttgtttaaattcgagcaaaacctctgcaatctaaaga |
24177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 4470 - 4429
Alignment:
| Q |
243 |
ttctcaagtaccaaatgtcttctccatgttggttgtactaga |
284 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4470 |
ttctgaagtaccaagtgtcttctccaagttggttgtactaga |
4429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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