View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_low_6 (Length: 444)

Name: NF4562_low_6
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_low_6
NF4562_low_6
[»] chr7 (38 HSPs)
chr7 (1-435)||(7259663-7260097)
chr7 (289-409)||(48777254-48777374)
chr7 (288-435)||(43457454-43457601)
chr7 (283-409)||(48647448-48647574)
chr7 (292-409)||(30925013-30925130)
chr7 (289-409)||(48788677-48788797)
chr7 (289-435)||(7258273-7258419)
chr7 (289-435)||(35727697-35727842)
chr7 (289-407)||(44334456-44334574)
chr7 (287-407)||(35729093-35729213)
chr7 (316-435)||(10899052-10899171)
chr7 (290-435)||(44333138-44333281)
chr7 (293-401)||(48646051-48646159)
chr7 (288-399)||(45583681-45583792)
chr7 (292-398)||(46286504-46286610)
chr7 (289-398)||(8048800-8048909)
chr7 (289-409)||(42477379-42477498)
chr7 (291-401)||(44530624-44530725)
chr7 (327-402)||(8375595-8375670)
chr7 (344-435)||(45584475-45584566)
chr7 (316-401)||(8374939-8375024)
chr7 (342-402)||(13578332-13578392)
chr7 (328-435)||(12223678-12223785)
chr7 (339-409)||(44529076-44529146)
chr7 (289-402)||(39708101-39708214)
chr7 (342-409)||(33607628-33607695)
chr7 (293-391)||(34704911-34705009)
chr7 (289-405)||(5930142-5930257)
chr7 (326-390)||(10894385-10894449)
chr7 (341-401)||(12220073-12220133)
chr7 (323-409)||(34888928-34889014)
chr7 (352-409)||(43461733-43461789)
chr7 (341-409)||(8879548-8879616)
chr7 (347-409)||(25621726-25621788)
chr7 (293-409)||(7509476-7509591)
chr7 (349-401)||(32793229-32793281)
chr7 (293-406)||(385619-385732)
chr7 (316-401)||(24844598-24844683)
[»] chr2 (34 HSPs)
chr2 (286-435)||(17330209-17330358)
chr2 (293-435)||(2910102-2910244)
chr2 (292-409)||(31090165-31090282)
chr2 (289-409)||(31091532-31091652)
chr2 (289-409)||(32766244-32766364)
chr2 (290-435)||(7073638-7073783)
chr2 (293-409)||(32764940-32765056)
chr2 (311-401)||(17466841-17466931)
chr2 (289-409)||(39016388-39016506)
chr2 (290-407)||(24459453-24459570)
chr2 (289-401)||(24458058-24458170)
chr2 (289-400)||(2911505-2911616)
chr2 (333-409)||(14704048-14704124)
chr2 (294-400)||(34037687-34037793)
chr2 (316-409)||(40000339-40000432)
chr2 (289-409)||(5914997-5915117)
chr2 (282-404)||(31814354-31814474)
chr2 (343-409)||(17466093-17466159)
chr2 (289-400)||(39015003-39015114)
chr2 (351-400)||(21733785-21733834)
chr2 (343-409)||(34582675-34582741)
chr2 (321-409)||(33161797-33161885)
chr2 (343-401)||(38985002-38985060)
chr2 (323-404)||(7412124-7412205)
chr2 (342-409)||(38853806-38853873)
chr2 (344-400)||(21732163-21732216)
chr2 (341-402)||(12746213-12746274)
chr2 (342-409)||(5914355-5914422)
chr2 (342-409)||(11985742-11985809)
chr2 (342-401)||(26586308-26586367)
chr2 (378-409)||(37607189-37607220)
chr2 (288-409)||(33163463-33163585)
chr2 (324-401)||(8420046-8420123)
chr2 (328-400)||(43380617-43380689)
[»] chr5 (30 HSPs)
chr5 (289-409)||(8074449-8074569)
chr5 (289-435)||(4592859-4593005)
chr5 (287-409)||(28591119-28591241)
chr5 (289-409)||(546041-546160)
chr5 (288-409)||(2464666-2464787)
chr5 (288-409)||(2466779-2466900)
chr5 (289-409)||(16611726-16611846)
chr5 (289-409)||(25590429-25590548)
chr5 (289-409)||(40612664-40612784)
chr5 (288-406)||(9538057-9538175)
chr5 (289-398)||(21069287-21069396)
chr5 (318-402)||(19182977-19183061)
chr5 (288-435)||(8075812-8075959)
chr5 (321-409)||(32641731-32641819)
chr5 (316-402)||(19186232-19186318)
chr5 (289-409)||(14891152-14891268)
chr5 (328-400)||(544685-544757)
chr5 (316-409)||(9537048-9537140)
chr5 (288-385)||(18400187-18400284)
chr5 (316-409)||(32640313-32640406)
chr5 (316-406)||(18004663-18004753)
chr5 (339-396)||(4594118-4594174)
chr5 (289-361)||(13651173-13651244)
chr5 (282-401)||(31947050-31947169)
chr5 (354-400)||(14881010-14881056)
chr5 (298-396)||(13483174-13483276)
chr5 (341-397)||(13483070-13483126)
chr5 (295-435)||(16978996-16979136)
chr5 (331-435)||(28589739-28589843)
chr5 (287-401)||(12445430-12445543)
[»] chr3 (36 HSPs)
chr3 (288-409)||(17700515-17700636)
chr3 (293-409)||(17701924-17702040)
chr3 (289-406)||(2591625-2591742)
chr3 (289-409)||(36278950-36279070)
chr3 (289-409)||(55388071-55388191)
chr3 (289-407)||(2592014-2592132)
chr3 (290-409)||(48572984-48573103)
chr3 (288-435)||(52316976-52317123)
chr3 (323-405)||(11773060-11773142)
chr3 (289-434)||(52318297-52318442)
chr3 (289-409)||(47118056-47118176)
chr3 (330-409)||(36280322-36280401)
chr3 (288-407)||(34263802-34263921)
chr3 (289-402)||(45600951-45601063)
chr3 (289-409)||(47075356-47075476)
chr3 (338-409)||(48574464-48574535)
chr3 (312-403)||(48808387-48808478)
chr3 (288-435)||(53957672-53957817)
chr3 (316-435)||(50753842-50753961)
chr3 (327-409)||(53959105-53959187)
chr3 (289-402)||(33428447-33428560)
chr3 (289-405)||(3671037-3671152)
chr3 (289-409)||(19115152-19115271)
chr3 (287-409)||(49261542-49261661)
chr3 (291-403)||(55389480-55389592)
chr3 (316-435)||(20464094-20464213)
chr3 (289-401)||(19114531-19114643)
chr3 (316-366)||(19331133-19331183)
chr3 (313-390)||(47427882-47427959)
chr3 (289-400)||(33427751-33427860)
chr3 (287-401)||(47428576-47428684)
chr3 (371-409)||(48809659-48809697)
chr3 (243-284)||(38003770-38003811)
chr3 (343-406)||(36827483-36827546)
chr3 (343-401)||(40205934-40205992)
chr3 (374-404)||(45598988-45599018)
[»] chr1 (28 HSPs)
chr1 (282-435)||(32665749-32665902)
chr1 (289-401)||(10333199-10333311)
chr1 (289-435)||(9339644-9339790)
chr1 (289-409)||(9341030-9341150)
chr1 (316-409)||(7945559-7945652)
chr1 (288-435)||(52439476-52439619)
chr1 (286-409)||(5782409-5782532)
chr1 (286-409)||(6612414-6612537)
chr1 (288-409)||(10332983-10333104)
chr1 (324-401)||(52440572-52440649)
chr1 (312-409)||(7944176-7944273)
chr1 (342-402)||(6613991-6614051)
chr1 (343-401)||(22856732-22856790)
chr1 (318-401)||(5783122-5783205)
chr1 (337-400)||(25037924-25037987)
chr1 (337-400)||(25043136-25043199)
chr1 (318-393)||(44020013-44020088)
chr1 (342-399)||(3117700-3117757)
chr1 (293-409)||(11060789-11060905)
chr1 (342-402)||(50107215-50107275)
chr1 (287-398)||(534574-534684)
chr1 (351-407)||(34088476-34088532)
chr1 (343-409)||(32664564-32664622)
chr1 (293-409)||(1407642-1407758)
chr1 (338-401)||(1001201-1001264)
chr1 (328-401)||(8975196-8975269)
chr1 (372-409)||(22857584-22857621)
chr1 (288-401)||(44719347-44719460)
[»] chr8 (24 HSPs)
chr8 (289-435)||(35177393-35177539)
chr8 (289-435)||(32898424-32898570)
chr8 (289-409)||(35178809-35178929)
chr8 (290-435)||(10407563-10407708)
chr8 (287-435)||(1952949-1953096)
chr8 (293-409)||(5965447-5965563)
chr8 (288-399)||(41754810-41754920)
chr8 (289-390)||(41753996-41754097)
chr8 (288-398)||(30134563-30134673)
chr8 (312-401)||(45476183-45476272)
chr8 (337-407)||(28619552-28619622)
chr8 (287-401)||(31073990-31074104)
chr8 (328-409)||(5736879-5736960)
chr8 (292-394)||(1951944-1952045)
chr8 (354-405)||(10406269-10406320)
chr8 (338-401)||(28619036-28619099)
chr8 (299-409)||(8569416-8569526)
chr8 (342-396)||(41121160-41121214)
chr8 (332-401)||(5738036-5738105)
chr8 (338-403)||(12637769-12637834)
chr8 (312-401)||(24198955-24199044)
chr8 (343-409)||(28524810-28524876)
chr8 (318-400)||(33314888-33314970)
chr8 (361-401)||(45476576-45476616)
[»] chr4 (28 HSPs)
chr4 (289-435)||(42278047-42278193)
chr4 (293-402)||(47874566-47874675)
chr4 (290-409)||(47878489-47878608)
chr4 (289-401)||(53771062-53771174)
chr4 (284-397)||(31844715-31844828)
chr4 (338-402)||(26172954-26173018)
chr4 (316-398)||(54574450-54574532)
chr4 (289-401)||(4703230-4703342)
chr4 (293-401)||(53770335-53770443)
chr4 (299-401)||(39870687-39870789)
chr4 (338-435)||(50694796-50694893)
chr4 (301-409)||(39868932-39869038)
chr4 (288-409)||(48740025-48740146)
chr4 (338-406)||(21621870-21621938)
chr4 (337-397)||(54574822-54574882)
chr4 (351-401)||(19050298-19050348)
chr4 (288-402)||(26170637-26170751)
chr4 (323-406)||(4701797-4701880)
chr4 (289-402)||(31844967-31845080)
chr4 (289-397)||(36453823-36453931)
chr4 (289-392)||(19051253-19051356)
chr4 (316-407)||(26685429-26685515)
chr4 (339-409)||(21623122-21623192)
chr4 (299-409)||(42391891-42392003)
chr4 (316-409)||(44158529-44158622)
chr4 (342-409)||(32244693-32244760)
chr4 (343-400)||(2786273-2786330)
chr4 (341-402)||(6039171-6039232)
[»] scaffold0034 (1 HSPs)
scaffold0034 (290-406)||(116054-116170)
[»] chr6 (9 HSPs)
chr6 (289-401)||(30747997-30748109)
chr6 (289-406)||(31218953-31219070)
chr6 (293-409)||(31219165-31219281)
chr6 (287-405)||(23507945-23508062)
chr6 (293-384)||(6468811-6468902)
chr6 (288-401)||(12676483-12676596)
chr6 (287-402)||(5265195-5265310)
chr6 (293-363)||(29845483-29845553)
chr6 (365-435)||(31239966-31240036)
[»] scaffold0039 (3 HSPs)
scaffold0039 (289-401)||(79696-79808)
scaffold0039 (291-401)||(79073-79183)
scaffold0039 (294-396)||(74331-74433)
[»] scaffold0767 (1 HSPs)
scaffold0767 (342-401)||(5650-5709)
[»] scaffold0237 (1 HSPs)
scaffold0237 (293-363)||(1688-1758)
[»] scaffold0369 (1 HSPs)
scaffold0369 (349-409)||(9141-9201)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 7260097 - 7259663
Alignment:
Q  1 gtcatgtgagccattaatgtgtttgtgctagctagcctagccctagctagtagtatcaacaagagattatgggagagtgtggataatgtttctcttgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7260097 gtcatgtgagccattaatgtgtttgtgctagctagcctagccctagctagtagtatcaacaagagattatgggagagtgtggataatgtttctcttgtcc 7259998  T
Q  101 ccctaggtttcatcctatttctatcccatacattcatttgttatcctaggatcttagaggatctttgaagtgtgnnnnnnnacacaaattaagaaatgtg 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||       || ||||||||||||||||    
T  7259997 ccctaggtttcatcctatttctatgccatacattcatttgttatcctaggatctcagaggatctttgaagtgtgtttttttacgcaaattaagaaatgtg 7259898  T
Q  201 ataatgttgtaaaattctttacatttttatcaaatatatttgtgtatttttcaccatcataaatgtaaattgagtataatgttttgaagagcaaatagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7259897 ataatgttgtaaaattctttacatttttatcaaatatatttgtgtattttttaccatcataaatgtaaattgagtataatgttttgaagagtaaatagtc 7259798  T
Q  301 actttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||||||||  ||||| || |||||||||||||||  ||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7259797 actttaatcgctgattttgtagctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttagt 7259698  T
Q  401 ccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||        ||||||||||||||||||    
T  7259697 ccctgacgttaaaaaaatctgttaagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 48777254 - 48777374
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  48777254 gagcaaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgt 48777353  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||| ||||||    
T  48777354 tatcactttagtccatgacgt 48777374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 43457454 - 43457601
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||| |||||||||||||| ||  |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  43457454 agagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccg 43457553  T
Q  388 ttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||| | ||||||        ||||||||||||||||||    
T  43457554 ttatcactttagttcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 283 - 409
Target Start/End: Complemental strand, 48647574 - 48647448
Alignment:
Q  283 tttgaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcac 382  Q
    |||| |||||||||||||||||||  |  ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  48647574 tttgtagagcaaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcac 48647475  T
Q  383 ttccgttatcactttagtccctgacgt 409  Q
    ||  |||||||||||||||||||||||    
T  48647474 ttttgttatcactttagtccctgacgt 48647448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 30925130 - 30925013
Alignment:
Q  292 caaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttat 391  Q
    ||||||||||||||||||  |||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30925130 caaatagtcactttaatccctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttat 30925031  T
Q  392 cactttagtccctgacgt 409  Q
     ||||||||| |||||||    
T  30925030 tactttagtctctgacgt 30925013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 48788797 - 48788677
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||||||||||| ||| |||| | |||| |||||||||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  48788797 gagcaaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgt 48788698  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  48788697 tatcactttagtctctgacgt 48788677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 7258273 - 7258419
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||  ||| ||| || |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  7258273 gagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgt 7258372  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||        ||||||||||||||||||    
T  7258373 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 35727697 - 35727842
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||| ||||||||| |||  ||| |||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  35727697 gagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgt 35727796  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||| ||||||||        ||||||||||||||||||    
T  35727797 tatcactttagt-cctgacgttaaaaatctctgttaagtgatgatgt 35727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 289 - 407
Target Start/End: Complemental strand, 44334574 - 44334456
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| |   ||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||| |    
T  44334574 gagcaaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccat 44334475  T
Q  389 tatcactttagtccctgac 407  Q
    |||||||||||||||||||    
T  44334474 tatcactttagtccctgac 44334456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 35729213 - 35729093
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||| |||| ||||| ||||||| ||||||||||||| ||||||||||||||||    
T  35729213 aagagcaaatagtcactttattccctgattttgcagctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttcc 35729114  T
Q  387 gttatcactttagtccctgac 407  Q
    | ||||||| |||||||||||    
T  35729113 gctatcactgtagtccctgac 35729093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 316 - 435
Target Start/End: Complemental strand, 10899171 - 10899052
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnn 415  Q
    |||||| ||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10899171 tctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaa 10899072  T
Q  416 nntctgttaagtgatgatgt 435  Q
      ||||||||||||||||||    
T  10899071 aatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 290 - 435
Target Start/End: Original strand, 44333138 - 44333281
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    ||||||||||||||||  ||  ||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44333138 agcaaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgtt 44333237  T
Q  390 atcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||  |||||| ||||||        ||||||||||||||||||    
T  44333238 atcac--tagtccttgacgttaaaaaaatctgttaagtgatgatgt 44333281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 48646051 - 48646159
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||||||||||||  ||  ||| | |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  48646051 aaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatc 48646150  T
Q  393 actttagtc 401  Q
    |||||||||    
T  48646151 actttagtc 48646159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 45583681 - 45583792
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||| ||  ||||||||||| ||||| ||||||| ||||||||||||| |||||||||| ||||||  |||| ||||||||||||    
T  45583681 agagcaaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccg 45583780  T
Q  388 ttatcactttag 399  Q
    ||||||||||||    
T  45583781 ttatcactttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 46286504 - 46286610
Alignment:
Q  292 caaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttat 391  Q
    ||||||||||||||| ||  ||| ||| || |||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46286504 caaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgttat 46286603  T
Q  392 cacttta 398  Q
    |||||||    
T  46286604 cacttta 46286610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 8048909 - 8048800
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||||||||||||  || ||| |||||| ||||||| |||| | ||| |||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  8048909 gagcaaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgt 8048810  T
Q  389 tatcacttta 398  Q
    ||||||||||    
T  8048809 tatcacttta 8048800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 42477379 - 42477498
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||| ||| |||  || |||| |||||| |||| |||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  42477379 gagcaaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc-ctgactctgcacttccgt 42477477  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||| |||| ||||||||||    
T  42477478 tatcattttaatccctgacgt 42477498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 44530725 - 44530624
Alignment:
Q  291 gcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtta 390  Q
    |||||||||||||||||| ||||||||||| ||||| ||||         || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  44530725 gcaaatagtcactttaatttttgattctgcggctcgttgtc---------cccgactcaggattaaatataaataagtctctgactctgcacttccgtta 44530635  T
Q  391 tcactttagtc 401  Q
    |||||||||||    
T  44530634 tcactttagtc 44530624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 8375670 - 8375595
Alignment:
Q  327 ctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  8375670 ctgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttagtcc 8375595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 435
Target Start/End: Complemental strand, 45584566 - 45584475
Alignment:
Q  344 gactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  45584566 gactcaggattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 8374939 - 8375024
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  8374939 tctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcactttagtc 8375024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 13578392 - 13578332
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13578392 ctgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtcc 13578332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 12223785 - 12223678
Alignment:
Q  328 tgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnnnntctgttaagt 427  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||||||||| |||| ||        ||||||||||    
T  12223785 tgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttagtcactgatgttaaataattctgttaagt 12223686  T
Q  428 gatgatgt 435  Q
    ||||||||    
T  12223685 gatgatgt 12223678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 44529076 - 44529146
Alignment:
Q  339 tccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||| ||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||    
T  44529076 tccctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgacgt 44529146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 39708101 - 39708214
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||| |||||||||||| ||| ||| |||| | ||||| |||||| | |||| ||||||| |||| |||||||| ||||| | |||| |||||||||||    
T  39708101 gagcatatagtcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgt 39708200  T
Q  389 tatcactttagtcc 402  Q
    ||||||||||||||    
T  39708201 tatcactttagtcc 39708214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 33607695 - 33607628
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||    
T  33607695 ctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatcattttagaccctgacgt 33607628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 391
Target Start/End: Original strand, 34704911 - 34705009
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttat 391  Q
    |||||||||||||| |||  || |||||| |||| ||||||| | | | |||||||||||||||||||||| |||||||||||| || |||| ||||||    
T  34704911 aaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctgactgtgtactttcgttat 34705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 5930257 - 5930142
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| ||| | | | ||||  ||||| ||||| | |||||| ||||||||||||||||||  || | || |||| |||||||||||    
T  5930257 gagcaaatggtcactttagtctcttactttgcacttcgctatcacaaaggtccctaactcaggattaaatacaagaaattttc-gactgtgcacttccgt 5930159  T
Q  389 tatcactttagtccctg 405  Q
    |||||||||||||||||    
T  5930158 tatcactttagtccctg 5930142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 10894385 - 10894449
Alignment:
Q  326 gctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtta 390  Q
    ||||| ||||| |||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  10894385 gctgttacataggtccctgactcaagattaaatataaataagtctctaattctgcacttccgtta 10894449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 12220073 - 12220133
Alignment:
Q  341 cctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||| | |||||||||||||    
T  12220073 cctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttagtc 12220133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 409
Target Start/End: Complemental strand, 34889014 - 34888928
Alignment:
Q  323 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||| | ||| || ||||| ||||||||| ||| | |||  | ||||||||||||||||||||||||||||| ||||||    
T  34889014 ctcgctgtcacaaaggtctctcactcatgattaaatataaagatgtccttaactctgcacttccgttatcactttagtccttgacgt 34888928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 43461789 - 43461733
Alignment:
Q  352 attaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||    
T  43461789 attaaatacaaataagttt-tgactatgcacttccgttatcactttagtctctgacgt 43461733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 8879616 - 8879548
Alignment:
Q  341 cctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||||  |||  |||| | |||| ||| |||||||||||||||||||||||    
T  8879616 cctgactcaggattaaatacaaagtagttcctgaatgtgcatttctgttatcactttagtccctgacgt 8879548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 25621788 - 25621726
Alignment:
Q  347 tcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||||| ||| | ||| | |||||||| ||||||||||||||| |||||||    
T  25621788 tcaggattaaatacaaattagtttttgaatgtgcacttctgttatcactttagtcactgacgt 25621726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 7509591 - 7509476
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||||||||||| ||||  ||||| | || |||| ||||||| | |||  ||| ||| ||||||||| ||| ||||||| || ||||||||||||||||     
T  7509591 aaatagtcactt-aatccatgattatacacctcgttgtcacaaaggtctttgattcatgattaaatataaagaagtctcagattctgcacttccgttatt 7509493  T
Q  393 actttagtccctgacgt 409  Q
    ||||||  |||||||||    
T  7509492 actttaacccctgacgt 7509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 32793229 - 32793281
Alignment:
Q  349 aggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||||||||||||||||||||  ||| |||||| ||| |||||||||||||||    
T  32793229 aggattaaatacaaataagtcattgattctgcatttcggttatcactttagtc 32793281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 385732 - 385619
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||| ||||||||  || |||| |||||| |||| ||||||| | |||||| ||||| |||| ||||||||  ||| | ||| | ||||||||  |||||    
T  385732 aaatggtcactttggtccttgactctgcatctcgttgtcacagaggtccctaactcatgattgaatacaaagtagtttatgaatatgcacttctattatc 385633  T
Q  393 actttagtccctga 406  Q
    | ||||||||||||    
T  385632 agtttagtccctga 385619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 401
Target Start/End: Original strand, 24844598 - 24844683
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||||| |||||||||||  | |||| | |||||||||||||||||||  ||||  ||| | ||||||||| |||||| |||||||    
T  24844598 tctgcacctcgctgtcaccaaggtccataactcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 286 - 435
Target Start/End: Complemental strand, 17330358 - 17330209
Alignment:
Q  286 gaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttc 385  Q
    ||||||||||||||| ||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  17330358 gaagagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttc 17330259  T
Q  386 cgttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||||| ||||||        ||||||||||||||||||    
T  17330258 cgttatcactttagtccatgacgttaagttattctgttaagtgatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 293 - 435
Target Start/End: Original strand, 2910102 - 2910244
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| || ||    
T  2910102 aaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtc 2910201  T
Q  393 actttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||        ||||||||||||||||||    
T  2910202 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 31090165 - 31090282
Alignment:
Q  292 caaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttat 391  Q
    |||||||||| |||| ||  ||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31090165 caaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttat 31090264  T
Q  392 cactttagtccctgacgt 409  Q
     | |||||||||||||||    
T  31090265 gattttagtccctgacgt 31090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 31091652 - 31091532
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||  ||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31091652 gagcaaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgt 31091553  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  31091552 tatcactttagtctctgacgt 31091532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 32766364 - 32766244
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||  ||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32766364 gagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgt 32766265  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||| ||||||    
T  32766264 tatcactttagtccttgacgt 32766244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 290 - 435
Target Start/End: Original strand, 7073638 - 7073783
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    ||||||||||||||||| || || |||||||||||  ||||| |||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||    
T  7073638 agcaaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgtt 7073737  T
Q  390 atcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||||||||        ||||||||||||||||||    
T  7073738 atcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 32764940 - 32765056
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||||||||||||| ||  ||||||||||||| | ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32764940 aaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 32765039  T
Q  393 actttagtccctgacgt 409  Q
    |||||| ||||||||||    
T  32765040 actttaatccctgacgt 32765056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 17466931 - 17466841
Alignment:
Q  311 ttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||| |||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17466931 ttgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtc 17466841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 39016506 - 39016388
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacat--aagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||  |  || ||||||||||||||||||||||||||||    |||||||||||||    
T  39016506 gagcaaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcacttcc 39016411  T
Q  387 gttatcactttagtccctgacgt 409  Q
    ||||||||||||||| |||||||    
T  39016410 gttatcactttagtctctgacgt 39016388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 24459570 - 24459453
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    |||||| |||||||||  ||  ||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||  ||    
T  24459570 agcaaagagtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctatt 24459471  T
Q  390 atcactttagtccctgac 407  Q
    ||||||||||||||||||    
T  24459470 atcactttagtccctgac 24459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 289 - 401
Target Start/End: Original strand, 24458058 - 24458170
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||| ||||||||||| ||||||| ||||||||||||  ||||||||||||||||| ||||||||| ||||| |||    
T  24458058 gagcaaatagtcactttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgt 24458157  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  24458158 tatcactttagtc 24458170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 2911616 - 2911505
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||| || |||||||||||||||||||||||| || |||||||   ||||||| |||||||||||||||| |||||||||||    
T  2911616 gagcaaatagtcactttggtctctggttctgcagctcgctgtcacataaggccatgactcaaagttaaatataaataagtctctgactttgcacttccgt 2911517  T
Q  389 tatcactttagt 400  Q
    ||||||||||||    
T  2911516 tatcactttagt 2911505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 14704048 - 14704124
Alignment:
Q  333 cataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgacgt 14704124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 34037793 - 34037687
Alignment:
Q  294 aatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatca 393  Q
    ||||||||||||| || |||| |||||| || ||||||| | | |||| | |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatca 34037694  T
Q  394 ctttagt 400  Q
    |||||||    
T  34037693 ctttagt 34037687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 40000432 - 40000339
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| |||||||| |||||  ||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||    
T  40000432 tctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcactttattccctgacgt 40000339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 5915117 - 5914997
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||| |||||| |||||| ||| ||| |||  |||||||| |||||||||||| ||||| || |||||||||||||||    
T  5915117 gagcaaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgt 5915018  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||| ||| |||| |||||    
T  5915017 tatcaccttaatccccgacgt 5914997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 31814474 - 31814354
Alignment:
Q  282 ttttgaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgca 381  Q
    |||| |||||||||||||||||||| || || | |||||| |||||||| | |   ||| ||||||||| |||||||| ||| |||| | ||||||||||    
T  31814474 ttttaaagagcaaatagtcactttagtcatttactctgcacctcgctgttaaag--gtctctgactcagaattaaatataaagaagtttttgactctgca 31814377  T
Q  382 cttccgttatcactttagtccct 404  Q
    |||||||||||||||||||||||    
T  31814376 cttccgttatcactttagtccct 31814354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 17466093 - 17466159
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||||    
T  17466093 tgactcaggattaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgacgt 17466159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 39015003 - 39015114
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||| |||||||  ||  ||| |||||| ||||||| ||||||  ||| ||||||||||||||||||||||| |||| ||||||||||||| | |    
T  39015003 gagcaaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttcat 39015102  T
Q  389 tatcactttagt 400  Q
    ||||| ||||||    
T  39015103 tatcattttagt 39015114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 21733834 - 21733785
Alignment:
Q  351 gattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21733834 gattaaatacaaataagtctctgactctgcacttccgtcatcactttagt 21733785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 34582741 - 34582675
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| ||||||||||||||  |||| |||| | ||||||||||||||||||||||||||||||||    
T  34582741 tgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtccctgacgt 34582675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 33161797 - 33161885
Alignment:
Q  321 agctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| ||||||| | ||| ||| || |||||||||| |||| ||||||| |||| || |||||||||||||||||||||| ||||||    
T  33161797 agctcgttgtcacaaaggtctctgccttaggattaaatgcaaagaagtctcagactatgtacttccgttatcactttagtccttgacgt 33161885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 38985060 - 38985002
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||||| | |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  38985060 tgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcactttagtc 38985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 7412124 - 7412205
Alignment:
Q  323 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccct 404  Q
    |||| |||||||||  || |||||||| ||||||||| ||| ||||| ||||   |||||||||||||||||||||||||||    
T  7412124 ctcgttgtcacatagatctctgactcaagattaaatataaagaagtcactgatagtgcacttccgttatcactttagtccct 7412205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 38853806 - 38853873
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||  |||| || | | |||||||||||||||| ||||||| |||||||    
T  38853806 ctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgt 38853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 21732163 - 21732216
Alignment:
Q  344 gactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||||||||||||||||||||||||   |||||||| ||||||||||| ||||||||    
T  21732163 gactcaggattaaatacaaataagt---tgactctgtacttccgttattactttagt 21732216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 12746274 - 12746213
Alignment:
Q  341 cctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||||||||||||||||||||||  |||  |||| | ||| |||||||||||||||||||||    
T  12746274 cctgactcaggattaaatacaaagtagttcctgaatgtgcccttccgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 5914355 - 5914422
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||  |||||||||||| |||||  ||||| |||||| ||||||||||||||| || ||||||    
T  5914355 ctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcactttagaccatgacgt 5914422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 11985742 - 11985809
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||  |||||||||   |||| || |||||||| |||||||||| ||||    
T  11985742 ctgactcaggattaaatacaaagtagtctctgaaggtgcattttcgttatcagtttagtccctaacgt 11985809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 26586367 - 26586308
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||||||| ||||||||| |||  ||||| ||| | ||||||||||||||||||||||||    
T  26586367 ctgactcaagattaaatataaagtagtctttgaatgtgcacttccgttatcactttagtc 26586308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 37607189 - 37607220
Alignment:
Q  378 tgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||||||||||||    
T  37607189 tgcacttccgttatcactttagtccctgacgt 37607220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 33163585 - 33163463
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataa-gtctctgactctgcacttcc 386  Q
    |||||||||  |||||||| ||||||| ||| || | || |||| || |  || ||||||||  |||||||||||| || || | ||||| |||| ||||    
T  33163585 agagcaaatgatcactttagtctttgactctacaccacgttgtcgcaaagttctctgactcataattaaatacaaaaaaagtatttgactatgcatttcc 33163486  T
Q  387 gttatcactttagtccctgacgt 409  Q
    ||||||||||||||| |||||||    
T  33163485 gttatcactttagtctctgacgt 33163463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 8420046 - 8420123
Alignment:
Q  324 tcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||| |||||| | |||||||| ||| |||||||||||||  |||| |||| | |||||||| ||||||| |||||||    
T  8420046 tcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctgttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 43380617 - 43380689
Alignment:
Q  328 tgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    ||||||| | ||| |||||||| ||||||||||| | |||||||||||| |||  ||  ||||||||||||||    
T  43380617 tgtcacaaaggtctctgactcatgattaaatacatagaagtctctgactgtgcgtttatgttatcactttagt 43380689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 8074449 - 8074569
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8074449 gagcaaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgt 8074548  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||| ||||||||    
T  8074549 tatcactttagttcctgacgt 8074569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 4592859 - 4593005
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4592859 gagcaaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgt 4592958  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||        ||||||||||||||||||    
T  4592959 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 409
Target Start/End: Complemental strand, 28591241 - 28591119
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||||||||||||||||| |||  ||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  28591241 aagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcc 28591142  T
Q  387 gttatcactttagtccctgacgt 409  Q
     |||||||||||||||| |||||    
T  28591141 tttatcactttagtccccgacgt 28591119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 546160 - 546041
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||   |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  546160 gagcaaatagtcactttagtccc-gattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgt 546062  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||    
T  546061 tatcactttagtccctgacgt 546041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 2464666 - 2464787
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| || ||||||||||| ||    
T  2464666 agagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacg 2464765  T
Q  388 ttatcactttagtccctgacgt 409  Q
    |||||||||||||| |||||||    
T  2464766 ttatcactttagtctctgacgt 2464787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 2466900 - 2466779
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||  ||| ||| |||||| |||||| ||||||| |||  ||| ||||||||||||| ||||||||| || ||||||||||||||    
T  2466900 agagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccg 2466801  T
Q  388 ttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||    
T  2466800 ttatcactttagtccctgacgt 2466779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 16611726 - 16611846
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| |||||||||||  |||| ||| || |||||||||||||| ||| |||||||||||||||||||||| ||| |||||| | |||||||||||    
T  16611726 gagcaaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgt 16611825  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  16611826 tatcactttagtctctgacgt 16611846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 25590429 - 25590548
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  | | ||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  25590429 gagcaaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgt 25590527  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||| || |||||||    
T  25590528 tatcactttaatctctgacgt 25590548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 40612784 - 40612664
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||| |||||||| ||||||| || |||||||||||||||||||||||| |||  |  ||||||||||||||||||    
T  40612784 gagcaaatagtcactttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaatacagatattttcctgactctgcacttccgt 40612685  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||| | ||||||||    
T  40612684 tatcactttaattcctgacgt 40612664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 406
Target Start/End: Complemental strand, 9538175 - 9538057
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||  ||  ||| |||||| |||| ||||| ||| |||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  9538175 agagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccg 9538076  T
Q  388 ttatcactttagtccctga 406  Q
    |||||| ||||||| ||||    
T  9538075 ttatcattttagtctctga 9538057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 21069287 - 21069396
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||| ||| |||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||  |||||||||||||| ||    
T  21069287 gagcaaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgt 21069386  T
Q  389 tatcacttta 398  Q
    | ||||||||    
T  21069387 tttcacttta 21069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 19182977 - 19183061
Alignment:
Q  318 tgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  19182977 tgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagtcc 19183061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 435
Target Start/End: Complemental strand, 8075959 - 8075812
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||| ||||  || |||| |||||| |||||||| | |||  ||||||| ||| ||||||||||||| |||| ||||| ||||||||| ||    
T  8075959 agagcaaatagtcgctttggtcattgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcg 8075860  T
Q  388 ttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||||||||||        ||||||||||||||||||    
T  8075859 ttatcactttagtccctgacgtttaaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 32641819 - 32641731
Alignment:
Q  321 agctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| |||||| || |||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||    
T  32641819 agctcgttgtcacgtaggtcccttactcaagattaaatacaaataagttgctgactctgcacttccgttatcactttaatccctgacgt 32641731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 402
Target Start/End: Complemental strand, 19186318 - 19186232
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||||| ||| | |||||||| |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  19186318 tctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttagtcc 19186232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 14891268 - 14891152
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||  | | |||||| |||||||||||||| ||| |||||||| |||||||| |||    |||||||||||| |||||||||    
T  14891268 gagcaaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaatgcaa----gtctctgactctacacttccgt 14891173  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  14891172 tatcactttagtctctgacgt 14891152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 544685 - 544757
Alignment:
Q  328 tgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    ||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  544685 tgtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttataaatttagt 544757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 9537048 - 9537140
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| |||||||||||||| ||| |||||| || |||||||||||| |||||  ||||| ||||||||| |||||||||||||| |||||||    
T  9537048 tctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc-atgactgtgcacttccattatcactttagtcactgacgt 9537140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 18400187 - 18400284
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttc 385  Q
    |||| |||| ||||||||| ||  ||| |||||| ||| |||||||||| |||| ||||||||||||||||| ||| ||||| |||||||||||||||    
T  18400187 agagtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttc 18400284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 32640313 - 32640406
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| ||| |||||||||| | || | ||||||||||||||||||||||||| || |||||  ||||| ||||||||||||||| |||||||    
T  32640313 tctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttagtctctgacgt 32640406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 18004663 - 18004753
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctga 406  Q
    |||||| ||| |||||||| |||||  |  || ||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||    
T  18004663 tctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccgttatcactttagtctctga 18004753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 396
Target Start/End: Complemental strand, 4594174 - 4594118
Alignment:
Q  339 tccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactt 396  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  4594174 tccctgactcaggattaaatacaaataagtc-atgactctgcacttccattatcactt 4594118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 13651244 - 13651173
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaataca 361  Q
    |||||||||||||||||| || |||| | |||| || ||||||||||| ||||||||||||||||||||||||    
T  13651244 gagcaaatagtcactttagtccttgactgtgcacct-gctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 401
Target Start/End: Complemental strand, 31947169 - 31947050
Alignment:
Q  282 ttttgaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgca 381  Q
    |||| ||||| |||||||||||||| ||| ||||||||||  | | ||||| |||  | ||| ||| |  |||||||||||| |||||| |||||||  |    
T  31947169 tttttaagagtaaatagtcactttagtctctgattctgcactttgttgtcatatagattccttacttaaaattaaatacaaacaagtctatgactctaga 31947070  T
Q  382 cttccgttatcactttagtc 401  Q
    ||||||||||||||||||||    
T  31947069 cttccgttatcactttagtc 31947050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 14881010 - 14881056
Alignment:
Q  354 taaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  14881010 taaacacaaataagtccctgactctgcacttccgttatcactttagt 14881056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 13483276 - 13483174
Alignment:
Q  298 gtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaa----atacaaataagtctctgactctgcacttccgttatca 393  Q
    ||||| ||| ||||||| |||||| ||||||| ||| || |||  ||||||| ||||||    ||||||| |||||||||||| ||||||||||||||||    
T  13483276 gtcacgttagtctttgactctgcacctcgctgccacgtaggtctttgactcatgattaattaaatacaaacaagtctctgactttgcacttccgttatca 13483177  T
Q  394 ctt 396  Q
    |||    
T  13483176 ctt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 13483070 - 13483126
Alignment:
Q  341 cctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcacttt 397  Q
    ||||||||| ||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  13483070 cctgactcatgattaaatataaagaagtctcttactctgcactttcgttatcacttt 13483126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 435
Target Start/End: Original strand, 16978996 - 16979136
Alignment:
Q  295 atagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcac 394  Q
    |||||||||||| || |||| | |||| || |||| |||| | |||  |||||||| ||||||| |||||||||| || |||||| |||| ||||||||     
T  16978996 atagtcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcat 16979095  T
Q  395 tttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||| || ||||        ||||||||||||||||||    
T  16979096 tttagtctctaacgttaagttattctgttaagtgatgatgt 16979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 435
Target Start/End: Original strand, 28589739 - 28589843
Alignment:
Q  331 cacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnnnntctgttaagtgat 430  Q
    |||||| ||||||||||||  ||||||||||||||  | | ||||| || |||||||||| || ||||||| |||||||        |||||||||||||    
T  28589739 cacataggtccctgactcataattaaatacaaatacatttttgactttgtacttccgttaccattttagtctctgacgttaaaaaaatctgttaagtgat 28589838  T
Q  431 gatgt 435  Q
    |||||    
T  28589839 gatgt 28589843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 12445543 - 12445430
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||| ||||||||||||| ||| |||| |||||| |||||| | ||| | ||| |||| || | |||||||| |||  |||| |||| | |||||||||    
T  12445543 aagaggaaatagtcactttgatccttgactctgcacctcgctcttacaaaggtctctgattcggaattaaatataaagtagtc-ctgaatgtgcacttcc 12445445  T
Q  387 gttatcactttagtc 401  Q
    |||||||| ||||||    
T  12445444 gttatcaccttagtc 12445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 17700515 - 17700636
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17700515 agagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccg 17700614  T
Q  388 ttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||    
T  17700615 ttatcactttagtccctgacgt 17700636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 17702040 - 17701924
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  17702040 aaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 17701941  T
Q  393 actttagtccctgacgt 409  Q
    |||||||||||||||||    
T  17701940 actttagtccctgacgt 17701924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 2591625 - 2591742
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  2591625 gagcaaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccat 2591724  T
Q  389 tatcactttagtccctga 406  Q
     |||||||||||||||||    
T  2591725 gatcactttagtccctga 2591742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 36278950 - 36279070
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||| | ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36278950 gagcaaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgt 36279049  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||| |||||||||||||||    
T  36279050 tatcattttagtccctgacgt 36279070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 55388071 - 55388191
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||  ||||||||||||| ||||    
T  55388071 gagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgt 55388170  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||    
T  55388171 tatcactttagtccctgacgt 55388191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 289 - 407
Target Start/End: Complemental strand, 2592132 - 2592014
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   ||||||||    
T  2592132 gagcaaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgt 2592033  T
Q  389 tatcactttagtccctgac 407  Q
    |||||||||||||||||||    
T  2592032 tatcactttagtccctgac 2592014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 48572984 - 48573103
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    ||||||||||||||||  ||  ||| |||||| |||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48572984 agcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgtt 48573083  T
Q  390 atcactttagtccctgacgt 409  Q
    ||||||||||||| ||||||    
T  48573084 atcactttagtccttgacgt 48573103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 52316976 - 52317123
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||| | ||||||||| ||||    
T  52316976 agagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccg 52317075  T
Q  388 ttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||| |||||||| ||||||        ||||||||||||||||||    
T  52317076 ttatcattttagtccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 323 - 405
Target Start/End: Complemental strand, 11773142 - 11773060
Alignment:
Q  323 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctg 405  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtccctg 11773060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 289 - 434
Target Start/End: Complemental strand, 52318442 - 52318297
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||| ||| ||||||  |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  52318442 gagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctga 52318343  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatg 434  Q
    ||| |||||||||||||||||        |||||||||||||||||    
T  52318342 tattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 47118176 - 47118056
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| ||  ||| |||||| |||| ||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||    
T  47118176 gagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgt 47118077  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||    
T  47118076 tatcactttagtccctgacgt 47118056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 330 - 409
Target Start/End: Complemental strand, 36280401 - 36280322
Alignment:
Q  330 tcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgacgt 36280322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 407
Target Start/End: Original strand, 34263802 - 34263921
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||   |  ||| |||||| |||||||||||| | |||| ||| |||||||||||||||||||||||||||||||| |||||||     
T  34263802 agagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttcca 34263901  T
Q  388 ttatcactttagtccctgac 407  Q
    ||||||||||| ||||||||    
T  34263902 ttatcactttaatccctgac 34263921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 45601063 - 45600951
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| ||  ||| ||||   |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  45601063 gagcaaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc-ctgactctgcacttccgt 45600965  T
Q  389 tatcactttagtcc 402  Q
    ||||||||||||||    
T  45600964 tatcactttagtcc 45600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 47075476 - 47075356
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| |||||||||||| |||| |||||| |||| ||||||||| |||| | ||||| ||||||||||||| ||  | |||||||| |||||||||    
T  47075476 gagcaaatggtcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccgt 47075377  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  47075376 tatcactttagtctctgacgt 47075356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 48574535 - 48574464
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  48574535 gtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagtccttgacgt 48574464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 48808387 - 48808478
Alignment:
Q  312 tgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccc 403  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||  || |||||||||||||||| |||||||||||||    
T  48808387 tgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttgtcactttagtccc 48808478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 53957672 - 53957817
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||| |  ||||||||||| |||||||| ||||| || |||||||||||| ||||||||||||||||| |||||||||||||||     
T  53957672 agagcaaatagtcactttagtacttgattctgcaactcgctgttacataggttcctgactcagga-taaatacaaataagtctatgactctgcacttccc 53957770  T
Q  388 ttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||| || |||  ||||||||||        ||||||||||||||||||    
T  53957771 ttaacaattt-ttccctgacgttaaaaaaatctgttaagtgatgatgt 53957817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 50753842 - 50753961
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnn 415  Q
    |||||| |||||||||||||| |||||| | ||||||||||||| ||| |||| ||||||||| |||||| ||||||||||||||||||| |||          
T  50753842 tctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatcactttagtccctgccgttaaaaa 50753941  T
Q  416 nntctgttaagtgatgatgt 435  Q
      ||||||||||||||||||    
T  50753942 aatctgttaagtgatgatgt 50753961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 53959187 - 53959105
Alignment:
Q  327 ctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||| ||| |||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgacgt 53959105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 33428560 - 33428447
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||  ||  ||| |||||| |||| ||||||||| ||||||||||||| |||||||||||| |||||  |||||||||| ||||||    
T  33428560 gagcaaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgt 33428461  T
Q  389 tatcactttagtcc 402  Q
    | ||||||||||||    
T  33428460 tgtcactttagtcc 33428447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 405
Target Start/End: Original strand, 3671037 - 3671152
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||| |||||||||||| || |||| | |||| ||| || ||||| | ||| ||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  3671037 gagcatatagtcacttta-tccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgt 3671135  T
Q  389 tatcactttagtccctg 405  Q
    |||||||||| ||||||    
T  3671136 tatcactttaatccctg 3671152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 19115271 - 19115152
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| |   ||| |||||| |||| ||||||||| |||| | ||||||||||||||||||| |||||  |||||||||||||||||    
T  19115271 gagcaaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc-atgactctgcacttccgt 19115173  T
Q  389 tatcactttagtccctgacgt 409  Q
    | | |||||||||||| ||||    
T  19115172 ttttactttagtccctaacgt 19115152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 409
Target Start/End: Complemental strand, 49261661 - 49261542
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    |||||||||||||||||||| ||  | ||||  ||  | | ||||||||| ||||||||||||||||||||||||||   |||||| |||||||| ||||    
T  49261661 aagagcaaatagtcactttagtccataattccacacattgttgtcacataggtccctgactcaggattaaatacaaa---gtctctaactctgcatttcc 49261565  T
Q  387 gttatcactttagtccctgacgt 409  Q
    ||||||||||||||| |||||||    
T  49261564 gttatcactttagtctctgacgt 49261542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 55389592 - 55389480
Alignment:
Q  291 gcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtta 390  Q
    |||||||||||||||  ||  | | |||||| |||||||||||||| |||  |||||||  ||||||||||| |||||| |||||||| |||||||||||    
T  55389592 gcaaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgtta 55389493  T
Q  391 tcactttagtccc 403  Q
    |||||||||||||    
T  55389492 tcactttagtccc 55389480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 20464094 - 20464213
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnn 415  Q
    |||||| |||| ||||||| | ||||||| |||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||  |||||          
T  20464094 tctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttagtccacgacgttaaata 20464193  T
Q  416 nntctgttaagtgatgatgt 435  Q
      ||||||||||||||||||    
T  20464194 actctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 401
Target Start/End: Original strand, 19114531 - 19114643
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||  |||||||| ||  ||| ||||||  ||| ||||||| | |||||||||||| ||||||||||||| ||||| || ||| |||||||||||    
T  19114531 gagcaaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgt 19114630  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  19114631 tatcactttagtc 19114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 19331133 - 19331183
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataa 366  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||||    
T  19331133 tctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 47427882 - 47427959
Alignment:
Q  313 gattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtta 390  Q
    |||| |||| |||||||||||||| |||| |||||||  |||||||||||| ||||| |||||| ||||||| |||||    
T  47427882 gattgtgcacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 33427751 - 33427860
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||||| | ||||| ||||  ||  | ||||||| |||| ||| |||||||||||||||||| |  | |||||||||||||| |||    
T  33427751 gagcaaatggtcactttaat-tctgattttgcacttccttatcacataggtccttgattcaggattaaatacaaattaacc-ctgactctgcactttcgt 33427848  T
Q  389 tatcactttagt 400  Q
    ||||||||||||    
T  33427849 tatcactttagt 33427860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 47428684 - 47428576
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    |||||||||| ||||||||||||  ||| | |||| ||| |||||||||| |||| ||||||| ||||      ||| |||||  |||||||||||||||    
T  47428684 aagagcaaatggtcactttaatccctgactttgcacctctctgtcacataggtccgtgactcaagatt------aaagaagtcattgactctgcacttcc 47428591  T
Q  387 gttatcactttagtc 401  Q
    |||||||||| ||||    
T  47428590 gttatcacttcagtc 47428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 409
Target Start/End: Complemental strand, 48809697 - 48809659
Alignment:
Q  371 ctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  48809697 ctgactctgcacttccgttatcactttagtccatgacgt 48809659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 38003770 - 38003811
Alignment:
Q  243 tgtatttttcaccatcataaatgtaaattgagtataatgttt 284  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  38003770 tgtatttttcatcattataaatgtaaattgagtataatgttt 38003811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 36827546 - 36827483
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctga 406  Q
    ||||||||||||||||| |||  | ||||||| | | |||||||||||||||||||||| ||||    
T  36827546 tgactcaggattaaatataaaataatctctgaatgtacacttccgttatcactttagtctctga 36827483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 40205934 - 40205992
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||| ||||||| |||||  ||||||||| | |||||||||||||||| |||||||    
T  40205934 tgactcacgattaaaaacaaagtagtctctgaatgtgcacttccgttatcagtttagtc 40205992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 404
Target Start/End: Original strand, 45598988 - 45599018
Alignment:
Q  374 actctgcacttccgttatcactttagtccct 404  Q
    |||||||||||||||||||||||||||||||    
T  45598988 actctgcacttccgttatcactttagtccct 45599018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 282 - 435
Target Start/End: Complemental strand, 32665902 - 32665749
Alignment:
Q  282 ttttgaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgca 381  Q
    |||| |||||||||||||||||||| ||  ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||    
T  32665902 ttttaaagagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgca 32665803  T
Q  382 cttccgttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||||| |||        ||||||||||||||||||    
T  32665802 cttccgttatcactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 10333311 - 10333199
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10333311 gagcaaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgt 10333212  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  10333211 tatcactttagtc 10333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 9339644 - 9339790
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||| ||||| ||  ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  9339644 gagcaaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgt 9339743  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||        ||||||||||||||||||    
T  9339744 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 9341150 - 9341030
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||||||||||| ||| || |||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  9341150 gagcaaatagtcactttgatcatttattctgcatctcactatcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgt 9341051  T
Q  389 tatcactttagtccctgacgt 409  Q
    ||||||||||||| |||||||    
T  9341050 tatcactttagtctctgacgt 9341030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 7945652 - 7945559
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7945652 tctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttagtccctgacgt 7945559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 52439476 - 52439619
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||||||||||||||||||  |  ||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||    ||||||| |||||    
T  52439476 agagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtct----ctctgcatttccg 52439571  T
Q  388 ttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||||||||||        ||||||||||||||||||    
T  52439572 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 52439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 5782409 - 5782532
Alignment:
Q  286 gaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttc 385  Q
    ||||||||||| |||| |||| ||  ||| |||||| |||||||||||||| ||| |||||||| ||||||||||||| |||||||||| | ||||||||    
T  5782409 gaagagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttc 5782508  T
Q  386 cgttatcactttagtccctgacgt 409  Q
    | |||||||||||||| |||||||    
T  5782509 ccttatcactttagtctctgacgt 5782532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 6612414 - 6612537
Alignment:
Q  286 gaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttc 385  Q
    ||||| ||||||||||||||| ||  ||| |||||| |||||||| | | | ||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  6612414 gaagaacaaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttc 6612513  T
Q  386 cgttatcactttagtccctgacgt 409  Q
    | ||||||||||| ||||||||||    
T  6612514 cattatcactttaatccctgacgt 6612537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 10332983 - 10333104
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||||||||||||| ||  ||| | |||| |||| ||||||||| |||| ||| ||||||||||||| ||||||||| || ||||||||||||||    
T  10332983 agagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccg 10333082  T
Q  388 ttatcactttagtccctgacgt 409  Q
    |||||| |||||||| ||||||    
T  10333083 ttatcattttagtccttgacgt 10333104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 52440649 - 52440572
Alignment:
Q  324 tcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  52440649 tcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagtc 52440572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 7944176 - 7944273
Alignment:
Q  312 tgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||| |||| |||||||||||||| ||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| |||||||||| ||||    
T  7944176 tgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttagtccctaacgt 7944273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 6614051 - 6613991
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6614051 ctgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttagtcc 6613991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 22856732 - 22856790
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  22856732 tgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttagtc 22856790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 5783205 - 5783122
Alignment:
Q  318 tgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||| ||||||||||||||  |||  ||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagtc 5783122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 25037924 - 25037987
Alignment:
Q  337 agtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||||    
T  25037924 agtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25037987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 25043136 - 25043199
Alignment:
Q  337 agtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||||    
T  25043136 agtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 393
Target Start/End: Original strand, 44020013 - 44020088
Alignment:
Q  318 tgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatca 393  Q
    |||| |||| ||||||| ||||| |||||||| ||||||||| ||| |||||||||||||||||||| ||||||||    
T  44020013 tgcaactcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctctgactctgcacttacgttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 3117700 - 3117757
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttag 399  Q
    |||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  3117700 ctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcactttag 3117757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 11060905 - 11060789
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||| |||||||| ||| |||| | |||| |||||||||||| | |||| |||||||  ||||||||||||  |||| |||| |  |||||| |||||||    
T  11060905 aaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatc 11060806  T
Q  393 actttagtccctgacgt 409  Q
    ||||||||||| |||||    
T  11060805 actttagtccccgacgt 11060789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 50107275 - 50107215
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||| |||||||||||||||||  ||||||||| | |||||||||||||||||||||||||    
T  50107275 ctgattcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtcc 50107215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 534684 - 534574
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||||||||||||| |||  | | ||  |||||| |||||||| ||||| || | ||| ||||||||||||||||| ||||| |||||||| ||||||     
T  534684 aagagcaaatagtcatttttgtttctggctctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtc-ctgactctacacttct 534586  T
Q  387 gttatcacttta 398  Q
    ||||||||||||    
T  534585 gttatcacttta 534574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 34088532 - 34088476
Alignment:
Q  351 gattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgac 407  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||| ||| ||||    
T  34088532 gattaaatacaaagaagtctctgactctgcacttccactatcactttaatccttgac 34088476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 32664564 - 32664622
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||    
T  32664564 tgactcaggattaaatacaaataa--------ctctgcacttccgttatcactttagtccttgacgt 32664622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 1407642 - 1407758
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    ||||| ||||||| |||| ||| |||||| || | ||||||| | |||| ||||| | || |||||| |||  ||| ||||| | |||||||  ||||||    
T  1407642 aaataatcactttcatctctgactctgcaccttgttgtcacaaaggtccatgacttatgactaaatataaagtagtttctgaatatgcacttatgttatc 1407741  T
Q  393 actttagtccctgacgt 409  Q
    |||||||||||||||||    
T  1407742 actttagtccctgacgt 1407758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 1001201 - 1001264
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    |||| |||||| ||||||||||||||  ||||||||| | |||||||| ||||||| |||||||    
T  1001201 gtccatgactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 8975196 - 8975269
Alignment:
Q  328 tgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||| | |||||||||||| ||||||||| |||  ||||  ||| | ||||||| ||||||||||||||||    
T  8975196 tgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgttatcactttagtc 8975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 22857621 - 22857584
Alignment:
Q  372 tgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  22857621 tgactttgcacttccgttatcactttagtccatgacgt 22857584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 401
Target Start/End: Original strand, 44719347 - 44719460
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||| |||| |||||||| ||| |||| | |||| |||| ||||||| |  || || ||||||||||||||| |||  ||| | ||| | ||||||||||    
T  44719347 agagtaaatggtcactttgatccttgactttgcatctcgttgtcacaaagatctctaactcaggattaaatataaagtagtttatgaatatgcacttccg 44719446  T
Q  388 ttatcactttagtc 401  Q
    |||||| |||||||    
T  44719447 ttatcattttagtc 44719460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 35177393 - 35177539
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||||||| |||| ||  | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  35177393 gagcaaatagtcaatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgt 35177492  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||        ||||||||||||||||||    
T  35177493 tatcactttagtccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 289 - 435
Target Start/End: Complemental strand, 32898570 - 32898424
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  ||| |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32898570 gagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgt 32898471  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||||||||||||||        ||||||||||||||||||    
T  32898470 tatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 289 - 409
Target Start/End: Complemental strand, 35178929 - 35178809
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||  ||  ||| ||||||  ||||||||| ||  |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  35178929 gagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgt 35178830  T
Q  389 tatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||    
T  35178829 tatcactttagtccctgacgt 35178809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 10407708 - 10407563
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||| |||  ||||| ||||||||| |||||||||||  | ||| ||||||||||||    
T  10407708 agcaaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgtt 10407609  T
Q  390 atcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||| ||||||||        ||||||||||||||||||    
T  10407608 atcactttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 435
Target Start/End: Complemental strand, 1953096 - 1952949
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||| |||||||||||||| ||  ||||||||||||||| ||||| |||  || |||||| ||||||| |||||||||||||| |||||||| ||||||    
T  1953096 aagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttcc 1952998  T
Q  387 gttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||| |||||||        ||||||||||||||||||    
T  1952997 gttatcactttagtctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 5965563 - 5965447
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    ||||||||| || | ||| ||||| | || |||| ||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  5965563 aaatagtcatttcagtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatc 5965464  T
Q  393 actttagtccctgacgt 409  Q
    ||||||||| |||||||    
T  5965463 actttagtctctgacgt 5965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 41754920 - 41754810
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||||||  || |||||||||||||||||||||| ||||  |||||||| ||||||||    
T  41754920 agagcaaatagtcactttaatcct-gattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccg 41754822  T
Q  388 ttatcactttag 399  Q
    |||| |||||||    
T  41754821 ttattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 289 - 390
Target Start/End: Original strand, 41753996 - 41754097
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  || ||||||| || ||||||||||| |||||||||||||||||||||| ||| ||||| |||||||| ||||| |||    
T  41753996 gagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgt 41754095  T
Q  389 ta 390  Q
    ||    
T  41754096 ta 41754097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 398
Target Start/End: Original strand, 30134563 - 30134673
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||||||||| |||||||| || || | |||||| |||||||||||| | |||||  ||||| ||||||||||||| |||| | |||||||||||||| |    
T  30134563 agagcaaataatcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctg 30134662  T
Q  388 ttatcacttta 398  Q
    |||||||||||    
T  30134663 ttatcacttta 30134673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 45476183 - 45476272
Alignment:
Q  312 tgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||| || |||||||| | | | |||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45476183 tgattcttcatctcgctgttagaaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagtc 45476272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 407
Target Start/End: Complemental strand, 28619622 - 28619552
Alignment:
Q  337 agtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgac 407  Q
    ||||||||||||||||||||||||||| | |||  ||||||||||||||  |||||||||||||| |||||    
T  28619622 agtccctgactcaggattaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgac 28619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 31073990 - 31074104
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||| |||| || |||||||||  ||| |||||| || ||||||||| ||||| ||||||| ||||||||| ||||  ||| ||||| | ||||||||     
T  31073990 aagagtaaatggttactttaatccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttct 31074089  T
Q  387 gttatcactttagtc 401  Q
    |||||||||||||||    
T  31074090 gttatcactttagtc 31074104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 5736879 - 5736960
Alignment:
Q  328 tgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||| || |||| |||| |||||||||||| || ||||| ||||| ||||| ||||||||||||||||||| ||||    
T  5736879 tgtcacataaatctctgattcagaattaaatacaaagaaatctctaactctacactttcgttatcactttagtccctcacgt 5736960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 1951944 - 1952045
Alignment:
Q  292 caaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttat 391  Q
    |||||||||||||| |||| | ||| |||| || ||| | |||||  ||| |||||||||||||||||||||||||| |||||||||||| || | ||||    
T  1951944 caaatagtcactttgatctctaattatgcaccttgctattacatagatcc-tgactcaggattaaatacaaataagtttctgactctgcattttcattat 1952042  T
Q  392 cac 394  Q
    |||    
T  1952043 cac 1952045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 10406269 - 10406320
Alignment:
Q  354 taaatacaaataagtctctgactctgcacttccgttatcactttagtccctg 405  Q
    |||||| ||| |||||||||||||||||||||  ||||||||||||||||||    
T  10406269 taaataaaaacaagtctctgactctgcacttctattatcactttagtccctg 10406320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 28619036 - 28619099
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||| || ||||||||||||| || ||  ||||||||||||| ||||||||||||||||    
T  28619036 gtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtc 28619099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 8569416 - 8569526
Alignment:
Q  299 tcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcacttta 398  Q
    ||||||| ||| |||| ||| || |||||| ||||| | |||  ||||||| |||||||||||||  ||| | ||| | ||||||| |||||||| ||||    
T  8569416 tcactttgatcattgactcttcacctcgctctcacaaaggtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagttta 8569515  T
Q  399 gtccctgacgt 409  Q
    |||||||||||    
T  8569516 gtccctgacgt 8569526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 41121160 - 41121214
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactt 396  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||  |||||||||    
T  41121160 ctgactcatgattaaatacaaagaagtctctgactatgcacttctattatcactt 41121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 5738105 - 5738036
Alignment:
Q  332 acataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||| |||| ||||||| ||||||||||||| ||||   |||||||| |||||||||||||||| ||||    
T  5738105 acataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttatcacttcagtc 5738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 12637834 - 12637769
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccc 403  Q
    |||||| |||||||||| ||||||||  |||  |||| | ||||||||||||||||||||||||||    
T  12637834 gtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcactttagtccc 12637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 24198955 - 24199044
Alignment:
Q  312 tgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||| || |||||||||||| | |||  ||| |||||||||||||||||  | ||  ||| | ||||||||||||||||||||||||    
T  24198955 tgattctacatctcgctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcactttagtc 24199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 28524810 - 28524876
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||||||||  | ||  ||| | |||||||||||||||| ||||||| |||||||    
T  28524810 tgactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgt 28524876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 33314888 - 33314970
Alignment:
Q  318 tgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||| ||||||||| || | ||| |||||||| |||||||||||||||||||   || |||  ||||| ||||||||||||||    
T  33314888 tgcacctcgctgtctcaaaggtctctgactcaagattaaatacaaataagtcatcgattctatacttcggttatcactttagt 33314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 45476616 - 45476576
Alignment:
Q  361 aaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  45476616 aaataagtcgctgactctgcacttctcttatcactttagtc 45476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 42278047 - 42278193
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  42278047 gagcaaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgt 42278146  T
Q  389 tatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    |||||||||| ||||||||||        ||||||||||||||||||    
T  42278147 tatcactttaatccctgacgttaaaaaaatctgttaagtgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 402
Target Start/End: Original strand, 47874566 - 47874675
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  47874566 aaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatc 47874665  T
Q  393 actttagtcc 402  Q
    ||||||||||    
T  47874666 actttagtcc 47874675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 47878608 - 47878489
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    |||||||||||||||| |||  ||| |||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  47878608 agcaaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgtt 47878509  T
Q  390 atcactttagtccctgacgt 409  Q
    ||||||||||||| ||||||    
T  47878508 atcactttagtccatgacgt 47878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 53771174 - 53771062
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| ||  ||| |||||| |||| ||||||||| ||||||||||||| |||||||||||| ||| | ||||||||||||||||||    
T  53771174 gagcaaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgt 53771075  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  53771074 tatcactttagtc 53771062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 397
Target Start/End: Original strand, 31844715 - 31844828
Alignment:
Q  284 ttgaagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcact 383  Q
    ||||||||||||||||||||||| ||  |   |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| ||||    
T  31844715 ttgaagagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacact 31844814  T
Q  384 tccgttatcacttt 397  Q
    ||| ||||||||||    
T  31844815 tcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 26173018 - 26172954
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26173018 gtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 26172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 54574450 - 54574532
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcacttta 398  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||||||||||   | |||||||||||||||||||||||||    
T  54574450 tctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 4703342 - 4703230
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| |   ||| ||| || |||||||||||||| |||||| |||||| |||||||||||| |||||| ||||| | |||||||||    
T  4703342 gagcaaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgt 4703243  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  4703242 tatcactttagtc 4703230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 53770335 - 53770443
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||| ||||||||| ||| ||| |||||| |||||  ||||||| || |||||||||| |||||||||||| |||||| ||||||||||||||| |||||    
T  53770335 aaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatc 53770434  T
Q  393 actttagtc 401  Q
    ||| |||||    
T  53770435 actctagtc 53770443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 39870789 - 39870687
Alignment:
Q  299 tcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcacttta 398  Q
    |||||||||||| ||| |||||| ||||||||||||||||| ||||| ||| ||||||| ||| | || || ||||||||||||||||| |||||||| |    
T  39870789 tcactttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaacacagagaaatcactgactctgcacttccgatatcacttca 39870690  T
Q  399 gtc 401  Q
    |||    
T  39870689 gtc 39870687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 50694796 - 50694893
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||  |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||        ||||||||||||||||||    
T  50694796 gtccctgactcaaaattaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 39868932 - 39869038
Alignment:
Q  301 actttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||||| ||| ||| |||||| |||||||| ||| | ||||||||||||  |||||||||||| |||| || ||||||||||||||||||||||||||||    
T  39868932 actttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt-tc-gactctgcacttccgttatcactttagt 39869029  T
Q  401 ccctgacgt 409  Q
    | |||||||    
T  39869030 ctctgacgt 39869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 48740146 - 48740025
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    ||||||||| ||||||||| ||  ||  |||||| |||  |||||| ||  |||||||||||  |||||||||||| ||||| |  |||||||||||| |    
T  48740146 agagcaaatggtcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctg 48740047  T
Q  388 ttatcactttagtccctgacgt 409  Q
    ||||||||||||||||||||||    
T  48740046 ttatcactttagtccctgacgt 48740025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 21621870 - 21621938
Alignment:
Q  338 gtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctga 406  Q
    ||||||||||||||||||||||||||  ||||  ||| | |||||||||||||||||||||||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctga 21621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 54574882 - 54574822
Alignment:
Q  337 agtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcacttt 397  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  54574882 agtccttgactcaggattaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 19050298 - 19050348
Alignment:
Q  351 gattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttagtc 19050348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 402
Target Start/End: Original strand, 26170637 - 26170751
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||||||||||| | |||| ||| ||| | |||| |||| ||| ||| ||||  |||||| | ||||||||||||||||||  || |||||||||||||     
T  26170637 agagcaaatagttagtttagtctctgactttgcacctcgttgttacaaaagtatctgacttaagattaaatacaaataagttccttactctgcacttcca 26170736  T
Q  388 ttatcactttagtcc 402  Q
    |||||||||||||||    
T  26170737 ttatcactttagtcc 26170751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 406
Target Start/End: Original strand, 4701797 - 4701880
Alignment:
Q  323 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctga 406  Q
    |||||||||||| | |||  ||||| | ||||||||||||| ||||| | |||| |||||||||| ||||||||||||||||||    
T  4701797 ctcgctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctga 4701880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 31845080 - 31844967
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    ||||||||| |||||||| | ||||||| |||| || | ||||| ||| ||  |||||||||||||||||||||| || | |  |||||| |||||||||    
T  31845080 gagcaaatactcactttagtttttgattttgcatcttgttgtcatataggtttctgactcaggattaaatacaaacaaattttagactctacacttccgt 31844981  T
Q  389 tatcactttagtcc 402  Q
    ||||| ||| ||||    
T  31844980 tatcattttcgtcc 31844967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 36453931 - 36453823
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||| ||||| || ||||||||||| |||||| | ||| | |||||||| | |||||||||| |||| ||| |||||||||| |||||  |     
T  36453931 gagcaaatggtccctttagtcattgattctgcatctcgctattacaaaggtccctgatttaggattaaatgcaaagaagcctctgactcttcacttttgc 36453832  T
Q  389 tatcacttt 397  Q
    |||||||||    
T  36453831 tatcacttt 36453823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 19051356 - 19051253
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||| ||  ||| ||| || |||| || |||| | ||| |||||||  ||||||||||||| |||||||||||||| ||||| |||    
T  19051356 gagcaaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctgactctacactttcgt 19051257  T
Q  389 tatc 392  Q
    ||||    
T  19051256 tatc 19051253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 26685515 - 26685429
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgac 407  Q
    |||||| |||||||||||||| |||||| |||     ||||||||| | |||||  ||||| |||||||||||||||||||||||| |||||    
T  26685515 tctgcacctcgctgtcacataggtccctcact-----ttaaatacatagaagtccttgactatgcacttccgttatcactttagtctctgac 26685429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 21623192 - 21623122
Alignment:
Q  339 tccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    ||||||| |||||||||||||||||  ||||  ||| | |||||||| ||||||||||||||||| |||||    
T  21623192 tccctgattcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgt 21623122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 42392003 - 42391891
Alignment:
Q  299 tcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctct--gactctgcacttccgttatcactt 396  Q
    |||||||| ||| ||| || ||| ||| |||||||||| ||| |||||||| |||||||||||||| |||| ||   | | ||||||||| |||||| ||    
T  42392003 tcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccctaataatgtgcacttcctttatcagtt 42391904  T
Q  397 tagtccctgacgt 409  Q
    ||||||| |||||    
T  42391903 tagtcccagacgt 42391891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 44158529 - 44158622
Alignment:
Q  316 tctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||| |||| ||| ||| | || ||||||||||||||||||||||| ||||| ||||||||  ||||  ||||| |||||| ||||| ||||    
T  44158529 tctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtccctgactctatacttttgttattactttaatccctaacgt 44158622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 32244760 - 32244693
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||| ||||||||||| |||||  ||||  ||| | ||||| ||||||||||||||||||||||||||    
T  32244760 ctgattcaggattaaagacaaagtagtccttgaatgtgcacatccgttatcactttagtccctgacgt 32244693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 2786273 - 2786330
Alignment:
Q  343 tgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagt 400  Q
    |||||||||||||||||||||| | ||  ||| | |||||||||||||||| ||||||    
T  2786273 tgactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 6039171 - 6039232
Alignment:
Q  341 cctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtcc 402  Q
    |||||||||  |||||||| ||||||||||||| || |||||||| | ||||| ||||||||    
T  6039171 cctgactcaaaattaaatataaataagtctctggctatgcacttctggtatcattttagtcc 6039232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 116054 - 116170
Alignment:
Q  290 agcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtt 389  Q
    ||||||||||||||||| |   | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  116054 agcaaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgtt 116153  T
Q  390 atcactttagtccctga 406  Q
    |||||||||||||||||    
T  116154 atcactttagtccctga 116170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 401
Target Start/End: Original strand, 30747997 - 30748109
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||| ||  |||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||| |||    
T  30747997 gagcaaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgt 30748096  T
Q  389 tatcactttagtc 401  Q
    |||||||||||||    
T  30748097 tatcactttagtc 30748109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 31218953 - 31219070
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||| ||||||||||||| ||| |||||| |||||||||||||| |||| | ||||||||||||||||||| ||||  ||||||||||||||||||    
T  31218953 gagcaaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgt 31219052  T
Q  389 tatcactttagtccctga 406  Q
    |||||||||| |||||||    
T  31219053 tatcactttaatccctga 31219070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 31219281 - 31219165
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatc 392  Q
    |||| ||||||||||||  ||| |||||| |||||||||||||| |||  | ||||||||||||||||||| ||||  |||||||  |||||||||||||    
T  31219281 aaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatc 31219182  T
Q  393 actttagtccctgacgt 409  Q
    ||||||||| |||||||    
T  31219181 actttagtctctgacgt 31219165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 23507945 - 23508062
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    |||||||||||||||||||| ||| || | || || ||| |||||||||| || ||||| ||||||||||||||||| || ||| ||||| | |||||||    
T  23507945 aagagcaaatagtcactttagtctctgct-ctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcc 23508043  T
Q  387 gttatcactttagtccctg 405  Q
     ||||||||||||||||||    
T  23508044 tttatcactttagtccctg 23508062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 6468902 - 6468811
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcactt 384  Q
    |||| ||||||||  ||||||| ||||||  ||||||||||| | |||||||||||| |||||||||||||  ||||||||| | |||||||    
T  6468902 aaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctgaatgtgcactt 6468811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 12676596 - 12676483
Alignment:
Q  288 agagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccg 387  Q
    |||| ||||||||||||| || | ||| |||||| |||| |||||||   ||| ||| ||||||||||||||||||  ||||||| | | |||||||  |    
T  12676596 agagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttg 12676497  T
Q  388 ttatcactttagtc 401  Q
    |||||| |||||||    
T  12676496 ttatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 5265195 - 5265310
Alignment:
Q  287 aagagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttcc 386  Q
    ||||| ||||||||| |||| |  ||||||||||| |||| ||| |||   ||| |||| ||| |||||||| ||||| || || ||| | |||||||||    
T  5265195 aagagtaaatagtcattttagttcttgattctgcacctcgttgttacaatggtctctgattcaagattaaatgcaaattagcctttgaatgtgcacttcc 5265294  T
Q  387 gttatcactttagtcc 402  Q
    ||||||| ||||||||    
T  5265295 gttatcagtttagtcc 5265310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 29845483 - 29845553
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaa 363  Q
    ||||||||||||||||| |||| || | | |||||||||||| ||||| || |||| ||| ||||||||||    
T  29845483 aaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaa 29845553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 435
Target Start/End: Complemental strand, 31240036 - 31239966
Alignment:
Q  365 aagtctctgactctgcacttccgttatcactttagtccctgacgtnnnnnnnntctgttaagtgatgatgt 435  Q
    ||||||||||||||||| ||||||||||| ||| ||||| |||||        ||||||||||||||||||    
T  31240036 aagtctctgactctgcatttccgttatcattttcgtcccagacgttaaatgattctgttaagtgatgatgt 31239966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 401
Target Start/End: Complemental strand, 79808 - 79696
Alignment:
Q  289 gagcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgt 388  Q
    |||||||||||||||||||||  ||| || ||| |||| ||| |||||||| ||||||||| ||||||||||||| |||||| |||||||||| |||  |    
T  79808 gagcaaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtctttgactctgcatttctat 79709  T
Q  389 tatcactttagtc 401  Q
    ||||| |||||||    
T  79708 tatcattttagtc 79696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 79073 - 79183
Alignment:
Q  291 gcaaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgtta 390  Q
    ||||||||||| |||| |   ||| |||||| |||||||||||||| |||| ||||||| ||||||||| ||| |||||  ||||| ||||| |||| ||    
T  79073 gcaaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgata 79172  T
Q  391 tcactttagtc 401  Q
    |||||||||||    
T  79173 tcactttagtc 79183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 74433 - 74331
Alignment:
Q  294 aatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtctctgactctgcacttccgttatca 393  Q
    |||||||| |||| ||  ||| |||||| ||| |||||||||| |||||| ||||| ||||||||||||| |||||  ||||||| ||| || | |||||    
T  74433 aatagtcagtttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgactctacacctctgatatca 74334  T
Q  394 ctt 396  Q
    |||    
T  74333 ctt 74331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 5650 - 5709
Alignment:
Q  342 ctgactcaggattaaatacaaataagtctctgactctgcacttccgttatcactttagtc 401  Q
    ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  5650 ctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtc 5709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 1688 - 1758
Alignment:
Q  293 aaatagtcactttaatctttgattctgcagctcgctgtcacataagtccctgactcaggattaaatacaaa 363  Q
    ||||||||||||||||| |||| || | | |||||||||||| ||||| || |||| ||| ||||||||||    
T  1688 aaatagtcactttaatccttgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaa 1758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 9201 - 9141
Alignment:
Q  349 aggattaaatacaaataagtctctgactctgcacttccgttatcactttagtccctgacgt 409  Q
    |||||||||||||||  ||||||||| | |||||||  ||||||| ||||||| |||||||    
T  9201 aggattaaatacaaaatagtctctgaatttgcacttttgttatcagtttagtctctgacgt 9141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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