View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4562_low_7 (Length: 433)
Name: NF4562_low_7
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 118 - 423
Target Start/End: Original strand, 7934640 - 7934946
Alignment:
| Q |
118 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934640 |
cattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttagattaaaaaataataattggtcataagataccatttagtga |
7934739 |
T |
|
| Q |
218 |
ctacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttatctccattacaaa |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7934740 |
ctacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcatagtttgctttgttgggaacaatgtttgtctccattacaaa |
7934839 |
T |
|
| Q |
318 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggcctt-gcataattgtccacactgataccctc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7934840 |
caaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataaatgcaatggccttcacataattgtccacactgataccctc |
7934939 |
T |
|
| Q |
417 |
ccctttg |
423 |
Q |
| |
|
||||||| |
|
|
| T |
7934940 |
ccctttg |
7934946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 7934497 - 7934640
Alignment:
| Q |
15 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcgttattctttca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7934497 |
tcatcagcaccacatttggtaacccctgttccattttttcctgtgtattatgtaatatttctcatgaaaaatacataatattttgttcattattctttca |
7934596 |
T |
|
| Q |
115 |
ttccattgttacaatatgtgccatagacgagttctttgtttctc |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934597 |
ttccattgttacaatatgtgccatagacgagttctttgtttctc |
7934640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3649 times since January 2019
Visitors: 8709