View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_8 (Length: 429)
Name: NF4562_low_8
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 34426130 - 34426532
Alignment:
| Q |
11 |
aatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcgtaaaaatacaaaatgtacgagcttacctttaacccagc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
34426130 |
aatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcggaaaaatacaaaatgtccgagcttacctttaacccagc |
34426229 |
T |
|
| Q |
111 |
cagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataataatcataaatagaacatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426230 |
cagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataataatcataaatagaacatat |
34426329 |
T |
|
| Q |
211 |
gtattttaagcatgttgacggatctttctgggaagaaacatcacc-nnnnnnngggatctgttacccaataaacgacagaaagtgagttaagcaactcca |
309 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426330 |
gtattttaagtatgttgacggatctttctgagaagaaacatcaccaaaaaaaagggatctgttacccaataaacgacagaaagtgagttaagcaactcca |
34426429 |
T |
|
| Q |
310 |
taacaagtgagcgcattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426430 |
taacaagtgagcgcattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaaaatttcatccacc |
34426529 |
T |
|
| Q |
410 |
tca |
412 |
Q |
| |
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||| |
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|
| T |
34426530 |
tca |
34426532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 34419099 - 34419216
Alignment:
| Q |
92 |
agcttacctttaacccagccagaggtattcactacaagaggcaagtgaatcttagaagaattttgtctcttatcaaaggtgcaatactcctttcgataat |
191 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||| ||||| ||||||| ||||| || |||||||||||||| ||||| |||| |||||| |
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| T |
34419099 |
agctcacctttaacccagccagaagtattcactataagaggcgtctgaattttagaagcattttttcgcttatcaaaggtgcgatacttcttttgataat |
34419198 |
T |
|
| Q |
192 |
aatcataaatagaacata |
209 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
34419199 |
gatcataaatggaacata |
34419216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 34418984 - 34419059
Alignment:
| Q |
11 |
aatgagtaacataataattgatatattgttattggtcgagaaaagcagtagtttatgtggcgtaaaaatacaaaatgta |
89 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||| || ||||||||||||||||| || ||||||||||||||| |
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| T |
34418984 |
aatgagtaacataataattgatatgttgtta---gtccaggaaagcagtagtttatgttaagtcaaaatacaaaatgta |
34419059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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