View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_9 (Length: 410)
Name: NF4562_low_9
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 3908768 - 3908375
Alignment:
| Q |
1 |
agcaaaaacagaagaagagtttttagccatagcagccatggtcaactgatcggttgattgtggcagtgttggctgagacagagaagaattacttgatggt |
100 |
Q |
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| T |
3908768 |
agcaaaaacagaagaagagtttttagccatagcagccatggtcaactgatcggttgattgtggcagtgttggctgagacagagaagaattacttgatggt |
3908669 |
T |
|
| Q |
101 |
gttgaggatgatggagttttggctttctttcccttacgacaaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatg |
200 |
Q |
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| T |
3908668 |
gttgaggatgatggagttttggatttctttcccttacgacaaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatg |
3908569 |
T |
|
| Q |
201 |
ttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcagaacttggtgttgaatgaatcacaccttggacacttctgaggttgaggatg |
300 |
Q |
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| T |
3908568 |
ttttgcagaagaaacgaggctgagataggctatagttgttgtaatagcagaacttggtgttgaatgaatcacacctaggacacttctgaggttgaggatg |
3908469 |
T |
|
| Q |
301 |
agcttgaacaagcttactcatctcacctcttcttccaccatctccactttcttgctccatctctcagtttttatttgagtgtgcgttttctaaa |
394 |
Q |
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| T |
3908468 |
agcttgaacaagcttactcatctcacctcttcttccaccatctccactttcttgctccatctctcagtttttatttgagtgtgcgttttctaaa |
3908375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 262
Target Start/End: Complemental strand, 39741183 - 39741064
Alignment:
| Q |
143 |
ccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgt |
242 |
Q |
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| T |
39741183 |
ccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaagactgtagttgttgt |
39741084 |
T |
|
| Q |
243 |
aatagcagaacttggtgttg |
262 |
Q |
| |
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|||| ||||| ||||||||| |
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| T |
39741083 |
aataacagaatttggtgttg |
39741064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 34646118 - 34646049
Alignment:
| Q |
141 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaa |
210 |
Q |
| |
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| T |
34646118 |
aaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaa |
34646049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 13481069 - 13481012
Alignment:
| Q |
229 |
gctatagttgttgtaatagcagaacttggtgttgaatgaatcacaccttggacacttc |
286 |
Q |
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| T |
13481069 |
gctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggacacttc |
13481012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 34976165 - 34976278
Alignment:
| Q |
169 |
tgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcagaacttggtgttgaatgaa |
268 |
Q |
| |
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|||||| |||| ||||| |||||||| || || ||||||||| | | |||||||| || || || |||||||| |||||||| ||||||| |||| |
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| T |
34976165 |
tgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagagagactgtaattgttgtagtagcagaatttggtgtgagttgaa |
34976264 |
T |
|
| Q |
269 |
tcacaccttggaca |
282 |
Q |
| |
|
|||||||||||||| |
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|
| T |
34976265 |
tcacaccttggaca |
34976278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 282
Target Start/End: Complemental strand, 41895928 - 41895787
Alignment:
| Q |
141 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgtt |
240 |
Q |
| |
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|||||||||| | |||||||||||| || | ||||||| |||||| |||||||| || |||||||| ||| | | || || || ||||||||||| || |
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| T |
41895928 |
aaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgagaggctatagttatt |
41895829 |
T |
|
| Q |
241 |
gtaatagcagaacttggtgttgaatgaatcacaccttggaca |
282 |
Q |
| |
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||| || ||||| || ||||| ||||| ||||||||||| |
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| T |
41895828 |
gtagtaacagaattttgtgttagttgaattgcaccttggaca |
41895787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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