View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4563-Insertion-1 (Length: 1065)
Name: NF4563-Insertion-1
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 976; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 976; E-Value: 0
Query Start/End: Original strand, 8 - 1061
Target Start/End: Complemental strand, 43882307 - 43881248
Alignment:
| Q |
8 |
aaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagccttttcaggcgaacggagaaactcagttttatggtcatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43882307 |
aaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagctttttcaggcgaacggagaaactcagttttatggtcatc |
43882208 |
T |
|
| Q |
108 |
catttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgtgcttagaaataccactaacggacttgttcagtgat |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882207 |
cattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgtgcttagaaataccactaacggacttgttcagtgat |
43882108 |
T |
|
| Q |
208 |
ttaagccgagactccttgttatcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaac |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882107 |
ttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaac |
43882008 |
T |
|
| Q |
308 |
ggagatactcagttttatagtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaat |
407 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882007 |
ggaaatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaat |
43881908 |
T |
|
| Q |
408 |
accactgacggacttgttcagtgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881907 |
accactgacggacttgttcagtgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagtt |
43881808 |
T |
|
| Q |
508 |
actcgcctagccttttcaggcgaacggagatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881807 |
actcgcctagccttttcaggcgaacggagatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttg |
43881708 |
T |
|
| Q |
608 |
atactttttgaatttgcttagaaataccaccaacggatgcgttcagtgatttaagcctttcaatctcctcatcttttttcaaaatagtgttcttcataga |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881707 |
atactttttgaatttgcttagaaataccaccaatggatgcgttcagtgatttaagcctttcaatctcctcatcttttttcaaaatagtgttcttcataga |
43881608 |
T |
|
| Q |
708 |
agtcaccttcaaagtaagacaaggtagaaaatacttgtcagagtacatgaaacaaaaggaaagcacaccgcataaccacaccgacgtattcaatttacat |
807 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43881607 |
agtcaccttcaaagtaagacaaagtagaaaatacttgtcagagtacatgaaacaaaagaaaagcacaccgcataaccacaccgacgtattcaatttacat |
43881508 |
T |
|
| Q |
808 |
gaacaaggtaaattacctgttcagataattctcttgtctccttgttatttcgtgcagctcctagttcaactgaggaaactctctcagcaaactttaaagt |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43881507 |
gaacaaggtaaattacctgttcagataattctctcgtctccttgttatttcgtgcagctcctagttcaactgaggaaactctctcagcaaactttaaagt |
43881408 |
T |
|
| Q |
908 |
actcaaagtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgaccgcctgtgcagtaaaatcaaagac-atatt-c |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
43881407 |
actcaaagtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgaccgcctgtgcagtaaaatcaaagacaatattcc |
43881308 |
T |
|
| Q |
1006 |
aatcaaaatctagtagaagcttg-aagaga-tctaaacc-aaag-taagcagatgaacat |
1061 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||| |
|
|
| T |
43881307 |
aatcaaaatctagtagaagcttgaaagagattctaaaccgaaagttaagcagatgaacat |
43881248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 8 - 664
Target Start/End: Complemental strand, 43882532 - 43881876
Alignment:
| Q |
8 |
aaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagccttttcaggcgaacggagaaactcagttttatggtcatc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43882532 |
aaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttttatggtcatc |
43882433 |
T |
|
| Q |
108 |
catttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgtgcttagaaataccactaacggacttgttcagtgat |
207 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
43882432 |
cattcgttgtttggtatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaataccactgacggacttgttcaatgat |
43882333 |
T |
|
| Q |
208 |
ttaagccgagactccttgttatcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaac |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |
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|
| T |
43882332 |
ttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagctttttcaggcgaac |
43882233 |
T |
|
| Q |
308 |
ggagatactcagttttatagtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaat |
407 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43882232 |
ggagaaactcagttttatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgtgcttagaaat |
43882133 |
T |
|
| Q |
408 |
accactgacggacttgttcagtgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagtt |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882132 |
accactaacggacttgttcagtgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagtt |
43882033 |
T |
|
| Q |
508 |
actcgcctagccttttcaggcgaacggagatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882032 |
actcgcctagccttttcaggcgaacggaaatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttg |
43881933 |
T |
|
| Q |
608 |
atactttttgaatttgcttagaaataccaccaacggatgcgttcagtgatttaagcc |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43881932 |
atactttttgaatttgcttagaaataccactgacggacttgttcagtgatttaagcc |
43881876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 223 - 664
Target Start/End: Complemental strand, 43882542 - 43882101
Alignment:
| Q |
223 |
ttgttatcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaacggagatactcagttt |
322 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
43882542 |
ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt |
43882443 |
T |
|
| Q |
323 |
tatagtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaataccactgacggactt |
422 |
Q |
| |
|
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43882442 |
tatggtcatccattcgttgtttggtatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatttgcttagaaataccactgacggactt |
43882343 |
T |
|
| Q |
423 |
gttcagtgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttt |
522 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||| |
|
|
| T |
43882342 |
gttcaatgatttaagccgagactccttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagctttt |
43882243 |
T |
|
| Q |
523 |
tcaggcgaacggagatactcagttttatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaattt |
622 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43882242 |
tcaggcgaacggagaaactcagttttatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttgatactttttgaatgt |
43882143 |
T |
|
| Q |
623 |
gcttagaaataccaccaacggatgcgttcagtgatttaagcc |
664 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
43882142 |
gcttagaaataccactaacggacttgttcagtgatttaagcc |
43882101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 882 - 976
Target Start/End: Original strand, 31645559 - 31645653
Alignment:
| Q |
882 |
gaaactctctcagcaaactttaaagtactcaaagtttcagaatacgaactgacgtccgagttaatctggacaaacatgagagtctttgcttgacc |
976 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||||| || || | | ||| || ||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
31645559 |
gaaaccctttcagcaaactttaaagtactcaaagattcagagtaagactttatgtctgaattaatttggactaacatgagtgtctttgcatgacc |
31645653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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