View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4563-Insertion-2 (Length: 753)

Name: NF4563-Insertion-2
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4563-Insertion-2
NF4563-Insertion-2
[»] chr1 (1 HSPs)
chr1 (8-753)||(36171855-36172598)


Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 8 - 753
Target Start/End: Original strand, 36171855 - 36172598
Alignment:
Q  8 tattctgcttctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171855 tattctgcttctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtga 36171954  T
Q  108 agaagaatgcatagtaccctgccagttgtttccaacaacatgaaccactagtcttacacatacaccagatcagacatgacaccggtagtaatttaagnnn 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||       
T  36171955 agaagaatgcatagtaccctgccagttgtttccaacaacatgaaccactagat-----catacaccagatcagacatgacaccggtagtaatttaagaag 36172049  T
Q  208 nnnnn---gtggttgacacatatggatactagacacgatattgacgcttaaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgttt 304  Q
            |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172050 aaaaaaaagtggttgacacatacggatactagacacgacactgacgcttaaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgttt 36172149  T
Q  305 gagtaccaaagacgtcttcactctgaagtgtttgtgctacataaatggcataaataccttgtttgttggggaggagagaaaagcctcaggagctccgtca 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36172150 gagtaccaaagacgtcttcactctgaagtgtttgtgctacataaatggcatagataccttgtttgttggggaggagagaaaagcctcaggagctccgtca 36172249  T
Q  405 ctccactcactgcaatcttcagaacctgaggggtttcgtttttctctcttaccatgttataaattgcacaagtgtttctgctactcggtgtgtaactgtt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172250 ctccactcactgcaatcttcagaacctgaggggtttcgtttttctctcttaccatgttataaattgcacaagtgtttctgctactcggtgtgtaactgtt 36172349  T
Q  505 tgagcagtgttgtttccgcaactgcaagggcggcgtcgtagtcttaatcagagattcagtaaacattaatcatcagaatttacttcttcatataaataat 604  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172350 tgagcagtgttgtttccgcaactgcaagggcggcgtcctagtcttaatcagagattcagtaaacattaatcatcagaatttacttcttcatataaataat 36172449  T
Q  605 tcaatttgatcactttacaagtaactcatctcagaataaagacatttattagtagtgtttattacctgggagtggaagtgtaaggctattgttggggatt 704  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36172450 tcaatttgatcactttacaaataactcatctcagaataaagacatttattagtagtgtttattacctgggagtggaagtgtaaggctattgtcggggatt 36172549  T
Q  705 ttccgttgaagcagcatgtttttgccatttcattcgacttctttatgat 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172550 ttccgttgaagcagcatgtttttgccatttcattcgacttctttatgat 36172598  T

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