View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4563-Insertion-3 (Length: 738)
Name: NF4563-Insertion-3
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563-Insertion-3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 8 - 738
Target Start/End: Complemental strand, 34728025 - 34727299
Alignment:
| Q |
8 |
tatgaaaaacaagtcattttgttgtgtttgtgttctgttttagcttatcattttctgatacagttaagttttcatcagtttctttatatccctctatgct |
107 |
Q |
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| T |
34728025 |
tatgaaaaacaagtcattttgttgtgtttgtgttctgttttagcttatcattttctgatacagttaagttttcatcagtttctttttatccctctatgct |
34727926 |
T |
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| Q |
108 |
gtaactatgtaactgtgtctttatttaaggaacaatcagtaactgtttagtatatgttttgttttataagattaatccatatgactctatgctgcaattg |
207 |
Q |
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| T |
34727925 |
gtaact--------gtgtctttgattaagtaacaatcagtaactgtttagtatatgttttgttttataagattaatccatatgactctatgctgcaattg |
34727834 |
T |
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| Q |
208 |
tgcatttgattcaatagcaatcactaactgttgagttgagtacaagttgtttttgtatgattaatccatttttcttgccttggcaagtaataatggtgtt |
307 |
Q |
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| T |
34727833 |
tgcatttgattcaatagcaatcactaactgttgagttgagtacaagttgtttttgtatgattaatccatttttcttgccttggcaagtaataatggtgtt |
34727734 |
T |
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| Q |
308 |
gattatttnnnnnnnnntaaatgaaaaggttcacactttttagatgttttttaagatttctctactgtatacatatatgtatattctttgtgcattttct |
407 |
Q |
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| T |
34727733 |
gattatttttaaaaaaataaatgaaaaggttcacactttt-agatgttttttaagatttctctactgtatacatatatgtatattctttgtgcattttct |
34727635 |
T |
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| Q |
408 |
gaatcattgatgcggtttataagtagtttcatttctttgactttgttaaaatgtctataaaaccttgttgtacttttccttgtttctagaaatactacaa |
507 |
Q |
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| T |
34727634 |
gaatcattgatgcggtttataagtagtttcatttctttgactt-gttaaaatgtctataaaaccttgttatacttttccttgtttctagaaatactacaa |
34727536 |
T |
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| Q |
508 |
cattacattgataatctcattttggcttatactttgcagattagattacctaatttctaagcttttct-----gatggacttgaatgcaatatctc--tc |
600 |
Q |
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| T |
34727535 |
cattacattgataatctcattt-ggcttatactttgcagattagattacctaatttctaagcttttcttttctgatggacttgaatgcaatatctccctc |
34727437 |
T |
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| Q |
601 |
ttcacagtgggaatgggatcacctaccattactcgatacaaaagcaactaaaaaccaaaaattacaaccaccaaactggactatggaacttgaccgagaa |
700 |
Q |
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| T |
34727436 |
ttcacagtgggaatgggatcacctaccattactcgatacaaaagcaactgaaaaccaaaaattacaaccaccaaactggactatggaacttgacccagaa |
34727337 |
T |
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| Q |
701 |
atcaatttcgggttgtatgatacgtccgttggaagtgg |
738 |
Q |
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| T |
34727336 |
atcaatttcgggttgtatgatacgcccgttggaagtgg |
34727299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 450 - 738
Target Start/End: Complemental strand, 34731824 - 34731534
Alignment:
| Q |
450 |
ttgttaaaatgtctataaaaccttgttgtacttttccttgtttctagaaatactacaacatta-cattgataatctcattttggcttatactttgcagat |
548 |
Q |
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| T |
34731824 |
ttgttaaaatgtctataaaaccttgttatacttttccttgtttctagaaaagcaacaacattagcattgataatctcattt-ggtttatactttgcagat |
34731726 |
T |
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| Q |
549 |
tagattacctaatttctaagcttttctgatggacttgaatgcaatatct--ctcttcacagtgggaatgggatcacctaccattactcgatacaaaagca |
646 |
Q |
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| T |
34731725 |
tagattacctaatttctaagcttttctgatggacttgaatgcaatatctccctcttcccagtgggactgggagcaccaatcattcttcaatgcaaaagca |
34731626 |
T |
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| Q |
647 |
actaaaaaccaaaaattacaaccaccaaactggactatggaacttgaccgagaaatcaatttcgggttgtatgatacgtccgttggaagtgg |
738 |
Q |
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| T |
34731625 |
actgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaatcaatgtcgggttgttcgatacacccggtggaagtgg |
34731534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 398 - 701
Target Start/End: Complemental strand, 34722599 - 34722295
Alignment:
| Q |
398 |
tgcattttctgaatcattgatgcggtttataagtagtttcatttctttgactttgttaaaatgtctataaaaccttgttgtacttttccttgtttctaga |
497 |
Q |
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| T |
34722599 |
tgcattttatgaataatttatgctgtttataagtggttttatttcgttga-tttgttaaaatgtctataaaaccttgttataattttccttgtttctaga |
34722501 |
T |
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| Q |
498 |
aatactacaacattacattgat-aatctcattttggcttatactttgcagattagattacctaatttctaagcttttctgatggacttgaatgcaatatc |
596 |
Q |
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|| | |||| | || | | |||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||| ||| |
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| T |
34722500 |
aaagcaacaaaactagtatcagcaatctcatttgatttta-actttgcagattagattccctaacttctgagcttttctgatggatttgaatgcaaaatc |
34722402 |
T |
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| Q |
597 |
tc--tcttcacagtgggaatgggatcacctaccattactcgatacaaaagcaactaaaaaccaaaaattacaaccaccaaactggactatggaacttgac |
694 |
Q |
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| T |
34722401 |
tccctcttcacagtgggaatgggatcacctaccattaccggatacaaaagctactgaaaataaaaaattacaaccaccaaactggagtatcaaattagac |
34722302 |
T |
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| Q |
695 |
cgagaaa |
701 |
Q |
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| T |
34722301 |
cgagaaa |
34722295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 34732374 - 34732319
Alignment:
| Q |
192 |
ctctatgctgcaattgtgcatttgattcaatagcaatcactaactgttgagttgagt |
248 |
Q |
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| T |
34732374 |
ctctatgctgcaacagtgc-tttgattcaataacaatcactaactgttgagttgagt |
34732319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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