View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4563-Insertion-4 (Length: 736)
Name: NF4563-Insertion-4
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 430 - 736
Target Start/End: Complemental strand, 2646914 - 2646606
Alignment:
| Q |
430 |
tagataaacactgcagtgatccattttcccatagaccagattaattagctaaaaagaatactttgaattttaattcgtgtgcttgaacaatataaatcct |
529 |
Q |
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| T |
2646914 |
tagataaacactgcagtgatccattttcccatggaccaaattaattagttaaaaagaatactttgaattttaattcgtgtgcttgaacaatataaatcct |
2646815 |
T |
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| Q |
530 |
aaggtagagnnnnnnnt--gaaagagtataagtactcacatcaaaatcaaactagccctaccacttcccactcccttcccatgcttctaaccaattttaa |
627 |
Q |
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| T |
2646814 |
aaggtagagaaaaaaatatgaaagagtataaatactcacatcaaaatcaaactagccctaccacttcccactcccttcccatgcttctaaccaattttaa |
2646715 |
T |
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| Q |
628 |
agttttgaagaaagaataatgatcctatatgcactttgcatccattatcataccaataaattttaacaaaatgaagttgtagcccactgccaaagtaaat |
727 |
Q |
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| T |
2646714 |
agttttgaagaaagaataatgatcctatatgcactttgcgtccattatcataccaataaattttaacaaaatgaagttgtagcccactgccaaagtaaat |
2646615 |
T |
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| Q |
728 |
gttcaaaat |
736 |
Q |
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||||||||| |
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| T |
2646614 |
gttcaaaat |
2646606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 114 - 427
Target Start/End: Complemental strand, 2647261 - 2646948
Alignment:
| Q |
114 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctaacgatagaagaaaaactgaatgttgagtaatatatatgtgactcatatacttaatgtcgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||| |
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| T |
2647261 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctcacgatagaagaaaaaatgaatgttgagtaatatatatgtgattcgtatatttaatgtcgta |
2647162 |
T |
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| Q |
214 |
agtctttgggtttagatatggtgtccaacttacttttgtgattgctcttagatctaatgtgatgatctctggactctctctaatgacccaactttggtat |
313 |
Q |
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| T |
2647161 |
agtctttgggtttagatatggtgtccaactcacttttgtgattgctcgtaggtctaatgtgatgatctccggactctccctaatggcccaactttggtat |
2647062 |
T |
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| Q |
314 |
cataatgtgtgttttattgggtgtaacgaaaatggcggtacaagtgtatgtaaatgaaaaaagtttttgctttcataataaagtaatggaccttcatttg |
413 |
Q |
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|| |||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2647061 |
cagaatgtgtgttttgttgagtgcaacggaaatagcggtacaagtgtatgtaaatgaaaaaagtttttgctttcataataaagtaatggaccttcatttg |
2646962 |
T |
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| Q |
414 |
agggagagattatt |
427 |
Q |
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||| |||||||||| |
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| T |
2646961 |
aggaagagattatt |
2646948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2647366 - 2647297
Alignment:
| Q |
8 |
gacatagtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2647366 |
gacatagtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
2647297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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