View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4563-Insertion-5 (Length: 679)

Name: NF4563-Insertion-5
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4563-Insertion-5
NF4563-Insertion-5
[»] chr8 (4 HSPs)
chr8 (8-679)||(43882382-43883053)
chr8 (519-679)||(43881707-43881867)
chr8 (519-679)||(43881932-43882092)
chr8 (519-679)||(43882157-43882317)


Alignment Details
Target: chr8 (Bit Score: 644; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 8 - 679
Target Start/End: Complemental strand, 43883053 - 43882382
Alignment:
Q  8 tcattaactacagataaattttcctttagaggagttaaattcattgttagtataatatctgttcctttagaggagttaaattcatggttagtataatatt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43883053 tcattaactacagatatattttcctttagaggagttaaattcattgttagtataatatctgttcctttagaggagttaaattcatggttagtataatatt 43882954  T
Q  108 catatgctctactaaaagcaaagtgaagaatagcatgacctctgagcaaggatgacagatacagcataaatcgagagaatttcattttaacatgcgtata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  43882953 catatgctctactaaaagcaaagtgaagaatagcatgacctctgagcaaggataacagatacagcataaatcgagagaatttcattttaacttgcatata 43882854  T
Q  208 cctgatgatttctttgaggggtcctttgctacagctgtggtagatgagattcggccaaatttccttaccgcttgaacagttctggatattactttggacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882853 cctgatgatttctttgaggggtcctttgctacagctgtggtagatgagattcggccaaatttccttaccgcttgaacagttctggatattactttggacc 43882754  T
Q  308 tgcaaaacacagatcaaaattttaaccataaatatcacatatacattaattttagacttgacttctaagcgatgcatatgttgttcctctgcaaatatgc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882753 tgcaaaacacagatcaaaattttaaccataaatatcacatatacattaattttagacttgacttctaagcgatgcatatgttgttcctctgcaaatatgc 43882654  T
Q  408 tgtaatagcataagcactactcacgtctttgacttatctgaagtctttttggcttcactcatactggaactatcagaagaaccatcagtttctgtgccga 507  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882653 tgtaatagcataagcactactcacgtcttcgacttatctgaagtctttttggcttcactcatactggaactatcagaagaaccatcagtttctgtgccga 43882554  T
Q  508 gagcaatactattgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggag 607  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882553 gagcaagactattgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggag 43882454  T
Q  608 aaactcagttttatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 679  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43882453 aaactcagttttatggtcatccattcgttgtttggtatcaccttcaacaaggtgcttaaaacttccacttga 43882382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 519 - 679
Target Start/End: Complemental strand, 43881867 - 43881707
Alignment:
Q  519 ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt 618  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  43881867 ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaacggagatactcagttt 43881768  T
Q  619 tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 679  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43881767 tatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 43881707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 519 - 679
Target Start/End: Complemental strand, 43882092 - 43881932
Alignment:
Q  519 ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt 618  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||    
T  43882092 ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagctgagactccttgagttactcgcctagccttttcaggcgaacggaaatactcagttt 43881993  T
Q  619 tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 679  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43881992 tatggtcatccatttgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 43881932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 519 - 679
Target Start/End: Complemental strand, 43882317 - 43882157
Alignment:
Q  519 ttgttgtcagaaaaatcacttgatctttgttgaaaatatgtagctgagactccttgagttactcgcctagccttttcaggcgaatggagaaactcagttt 618  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||    
T  43882317 ttgttgtcagaaaaatcacttgatttttgttgaaaatctgtagccgagactcctcgagttacttgcctagctttttcaggcgaacggagaaactcagttt 43882218  T
Q  619 tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882217 tatggtcatccattcgttgtttgatatcaccttcaacaaggtgcttaaaacttccacttga 43882157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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