View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4563-Insertion-7 (Length: 333)

Name: NF4563-Insertion-7
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4563-Insertion-7
NF4563-Insertion-7
[»] chr8 (4 HSPs)
chr8 (30-147)||(31372196-31372312)
chr8 (32-147)||(11659323-11659438)
chr8 (33-147)||(11668493-11668607)
chr8 (268-333)||(31372010-31372075)
[»] chr7 (5 HSPs)
chr7 (21-147)||(32248979-32249105)
chr7 (32-147)||(33426452-33426567)
chr7 (21-142)||(47815551-47815672)
chr7 (55-147)||(37504379-37504471)
chr7 (268-333)||(32248793-32248858)
[»] chr1 (5 HSPs)
chr1 (21-147)||(28851104-28851230)
chr1 (21-147)||(2170120-2170245)
chr1 (268-333)||(39482569-39482634)
chr1 (39-147)||(39482754-39482862)
chr1 (49-147)||(6844016-6844114)
[»] chr6 (2 HSPs)
chr6 (33-147)||(10460836-10460950)
chr6 (268-333)||(10461071-10461136)
[»] chr2 (4 HSPs)
chr2 (49-147)||(4867948-4868046)
chr2 (272-333)||(34750615-34750676)
chr2 (288-333)||(34745978-34746023)
chr2 (68-147)||(18751560-18751639)
[»] chr4 (1 HSPs)
chr4 (21-91)||(53239111-53239181)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 31372312 - 31372196
Alignment:
Q  30 ccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacagatgaaacaagtaagtttgataggatttatagaatt 129  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  31372312 ccgtacactcatatatttgtatgtaccaatacttcaaactaaaatggccaatagttttttaacagatggaacaagtaagtttgatagga-ttatagaatt 31372214  T
Q  130 agcaccaccaaacttgtg 147  Q
    |||||||||||| |||||    
T  31372213 agcaccaccaaatttgtg 31372196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 11659323 - 11659438
Alignment:
Q  32 gtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaatta 130  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||| ||| ||||||||||| |||  ||| |||||||||||    
T  11659323 gtacactcatatatttgtatgtaccaatactccaaattaaaatggtcaatagatttttgacagcatggaacaagtaagtatgactgga-ttatagaatta 11659421  T
Q  131 gcaccaccaaacttgtg 147  Q
    |||||||||||||||||    
T  11659422 gcaccaccaaacttgtg 11659438  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 11668493 - 11668607
Alignment:
Q  33 tacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattag 131  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||  ||||||||||| |||  ||| ||||||||||||    
T  11668493 tacacccatatatttgtatgtaccaatactccaaattaaaatggccaatagatttttgacagcatagaacaagtaagtatgactgga-ttatagaattag 11668591  T
Q  132 caccaccaaacttgtg 147  Q
    |||||||| |||||||    
T  11668592 caccaccagacttgtg 11668607  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 31372075 - 31372010
Alignment:
Q  268 attgcaataatttgagcattttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  31372075 attgcaataatttgagcattttcatcaagttttatttgaacgttgccaaacgataaaaatctttta 31372010  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 32249105 - 32248979
Alignment:
Q  21 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 119  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||  |||     
T  32249105 ctccttctaccgtacacccatatatttgtatgtaccaatactccaaattaaaatgaccaatagttttttgatagcatggaacaagtaagtttgactgga- 32249007  T
Q  120 ttatagaattagcaccaccaaacttgtg 147  Q
    ||||||||||||||||||||||||||||    
T  32249006 ttatagaattagcaccaccaaacttgtg 32248979  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 33426452 - 33426567
Alignment:
Q  32 gtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaatta 130  Q
    |||||| |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  33426452 gtacacccatatatttgtatgtatcaatactccaaactaaaatggtcaatagttttttgacagcatggaacaagtaagtttgattgga-ttatagaatta 33426550  T
Q  131 gcaccaccaaacttgtg 147  Q
    |||||||||||||||||    
T  33426551 gcaccaccaaacttgtg 33426567  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 47815672 - 47815551
Alignment:
Q  21 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgac-agatgaaacaagtaagtttgataggat 119  Q
    |||||||  |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||   ||     
T  47815672 ctccttctaccgtacacccatatatttgtatgtaacaatactccaaactaaaatggccaatagttttttgacaacatggaacaaataagtttga-ctgaa 47815574  T
Q  120 ttatagaattagcaccaccaaac 142  Q
    |||||||||||||||||||||||    
T  47815573 ttatagaattagcaccaccaaac 47815551  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 37504471 - 37504379
Alignment:
Q  55 ccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 147  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||   || ||||||||||||||||||||||||||||    
T  37504471 ccaatactccaaattaaaatgacgaatagttttttgacagcatggaacaagtaagtttgagtaga-ttatagaattagcaccaccaaacttgtg 37504379  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 32248858 - 32248793
Alignment:
Q  268 attgcaataatttgagcattttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    ||||||||| |||||||||||||||| | |||||||||||||||  ||||||||||||||||||||    
T  32248858 attgcaatagtttgagcattttcatcgaattttatttggacgtttccaaacgataaaaatctttta 32248793  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 28851104 - 28851230
Alignment:
Q  21 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 119  Q
    |||||||  |||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| |||||||||||||||  |||     
T  28851104 ctccttcttccgtacacccatatatttgtatgtaccaatactctagactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactgga- 28851202  T
Q  120 ttatagaattagcaccaccaaacttgtg 147  Q
    ||||||||||||||||||||||||||||    
T  28851203 ttatagaattagcaccaccaaacttgtg 28851230  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 2170120 - 2170245
Alignment:
Q  21 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 119  Q
    |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||| ||| |||||||||||||||   ||     
T  2170120 ctccttctaccgtacacccatatatttgtatgtaccaatactcctaactaaaatggtcaatag-tttttgacagcatgcaacaagtaagtttga-ctgaa 2170217  T
Q  120 ttatagaattagcaccaccaaacttgtg 147  Q
    ||||||||||||||||||||||||||||    
T  2170218 ttatagaattagcaccaccaaacttgtg 2170245  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 39482634 - 39482569
Alignment:
Q  268 attgcaataatttgagcattttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  39482634 attgcaatagtttgagcattttcatcgagttttatttggacgttttcaaacgataaaaatctttta 39482569  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 39482862 - 39482754
Alignment:
Q  39 catatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccac 137  Q
    |||| |||||||| || ||||||| |||| |||||||  ||||||||||||||||| |||||||||||||||||||   || |||||||||||||||||     
T  39482862 catacatttgtatatatcaatacttcaaattaaaatggtcaatagttttttgacagcatgaaacaagtaagtttgactcga-ttatagaattagcaccat 39482764  T
Q  138 caaacttgtg 147  Q
    ||||||||||    
T  39482763 caaacttgtg 39482754  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 6844114 - 6844016
Alignment:
Q  49 tatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 147  Q
    |||||| | ||||||||||| ||| |||||||||||||| |||||| ||| |||||||||||||||  ||| ||  ||| ||||||| ||||||||||||    
T  6844114 tatgtatcgatactccaaaccaaagtgaccaatagttttctgacagcatggaacaagtaagtttgactgga-ttgcagatttagcactaccaaacttgtg 6844016  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 10460836 - 10460950
Alignment:
Q  33 tacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattag 131  Q
    ||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||  ||| ||||||||||||    
T  10460836 tacacccatatatttgtatgtatcaatattccaaactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactgga-ttatagaattag 10460934  T
Q  132 caccaccaaacttgtg 147  Q
    ||||||||||||||||    
T  10460935 caccaccaaacttgtg 10460950  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 10461071 - 10461136
Alignment:
Q  268 attgcaataatttgagcattttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    ||||||| | |||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||    
T  10461071 attgcaacagtttgagcactttcatcgagttttatttggacgtttccaaacgataaaaatctttta 10461136  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 4868046 - 4867948
Alignment:
Q  49 tatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 147  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||  ||| || |||| ||||||||||||||||||||    
T  4868046 tatgtaccgatactccaaaccaaaatgaccaatagttttctgacagtatggaacaagtaagtttgactgga-ttgtagatttagcaccaccaaacttgtg 4867948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 34750676 - 34750615
Alignment:
Q  272 caataatttgagcattttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    |||||||||||||||||||||||| | |||||||||| |||  |||| ||||||| ||||||    
T  34750676 caataatttgagcattttcatcaattcttatttggacattgcaaaacaataaaaaactttta 34750615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 34746023 - 34745978
Alignment:
Q  288 ttcatcaagttttatttggacgttgtcaaacgataaaaatctttta 333  Q
    |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  34746023 ttcatcgagttttatttggaggttaccaaacgataaaaatctttta 34745978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 18751639 - 18751560
Alignment:
Q  68 ctaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 147  Q
    |||||||| |||||||||||||||||| ||| |||||  ||||||||  ||| || || | ||||||||||||||||||||    
T  18751639 ctaaaatggccaatagttttttgacagcatggaacaaaaaagtttgactgga-ttgtaaatttagcaccaccaaacttgtg 18751560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 53239111 - 53239181
Alignment:
Q  21 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttga 91  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  53239111 ctccttctaccgtacacccatatatttgtatgtaccaatactccaaactaaaatggtcaatagttttttga 53239181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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