View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4563_high_2 (Length: 392)
Name: NF4563_high_2
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 3918356 - 3917991
Alignment:
| Q |
16 |
aaaacaagaatcaaggaagcacccaagcataatttcaagcgctttctgttcatcaaaaaacttccccttgcgacccctgcaagctcttatttcaaataac |
115 |
Q |
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| T |
3918356 |
aaaacaagaatcaaggaagcacccaagcataatttcaagcgctttctgttcatcaaaaaacttccccttgcgacccctgcaagctcttatttcaaataac |
3918257 |
T |
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| Q |
116 |
gatttgaagaatagaatctttggatcaagtcatgctcctttatcaagtggaaaagacaaagtttattatggaaggacttgtcccgattccaccaccaggg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
3918256 |
gatttgaagaatagaatctttggatcaagtcatgctcctttatcaagtggaaaagacaaagtttattttggaaggacttgtcccgattccaccaccaagg |
3918157 |
T |
|
| Q |
216 |
ttagatacattacgtat--caatgtttctagttgcttgtttcatttgcattaattaactcaaaatggaaaaaacggtttatatataatatcatactacag |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918156 |
ttagatacattacgtatcccaatgtttctagttgcttgtttcatttgcattaattaactcaaaatggaaaaaacggtttatatataatatcatactacag |
3918057 |
T |
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| Q |
314 |
atggaacttgtatactatagttgctcttctgatatttgtcctatccaacattctcaccttaatcct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918056 |
atggaacttgtatactatagttgctcttctgatatttgtcctatccaacattctcaccttaatcct |
3917991 |
T |
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