View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4563_low_2 (Length: 419)
Name: NF4563_low_2
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 34626658 - 34627048
Alignment:
| Q |
10 |
catcatcaacaacattagccatgtaacacctatccatggtagattattttttatccgcatcaaaagaagatgttagctcagtagtaagagttcggcatta |
109 |
Q |
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| T |
34626658 |
catcatcaacaacattagccatgtaacacctatccatggtagattattttttatccgcatcaaaagaagatgttagctcagtagtaagagttcggcatta |
34626757 |
T |
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| Q |
110 |
taatatcaaggagtagagttgaaatttcctcgtaaatagttgtaaaatgatcattagtactattttaattaaaaaacaagaagaagaagaatgatcactc |
209 |
Q |
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| T |
34626758 |
taatatcaaggagtagagttgaaatttcctcgtaaatagttgtaaaatgatcattagtactattttaattaaaaaacgagaagaagaagaatgatcactc |
34626857 |
T |
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| Q |
210 |
actggaatgatcctgctttgagttgattccaaaccatagtttgatctgagtttgcttgaaccttgtcccnnnnnnnnggctttaacttagttttatgact |
309 |
Q |
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| T |
34626858 |
actggaatgatcctgctttgagttgattccaaaccatagtttgatctgagtttgcttgaaccttgtcccaaaaaaaaggctttaacttagttttatgact |
34626957 |
T |
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| Q |
310 |
atcaccttcaccttctgaaccaacagcagccttttcttgaacttttgatcctaaaggtctaggacccttttggccaaatggcggaggagct |
400 |
Q |
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| T |
34626958 |
atcaccttcaccttctgaaccaacaacagccttttcttgaacttttgatcctaaaggtctaggacccttttggccaaatggcggaggagct |
34627048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 31564440 - 31564372
Alignment:
| Q |
210 |
actggaatgatcctgctttgagttgattccaaaccatagtttgatctgagtttgcttgaaccttgtccc |
278 |
Q |
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||||||||||||||| ||||| |||||||||||||| | ||||||||| || ||| ||||||| |||| |
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| T |
31564440 |
actggaatgatcctgatttgatctgattccaaaccattgattgatctgaattagctggaaccttatccc |
31564372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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