View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4565-Insertion-1 (Length: 1100)
Name: NF4565-Insertion-1
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-1 |
 | |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 367 - 1085
Target Start/End: Original strand, 3380338 - 3381049
Alignment:
| Q |
367 |
acgcctgggcgtatttgaacagtgcccaatcttctctatcacgtctggcctcatgcaattgacgcctgggtgcatatcaacagcttcagaactaccttgg |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380338 |
acgcctgggcgtatttgaacagtgcccaatcttctctatcacgcctggcctcatgcaattgacgcctgggtgcatatcaacagcttcagaactaccttgg |
3380437 |
T |
|
| Q |
467 |
accgtgtaaaatacgcctgggcgtatttaaacagtggccaaaactgtctgtcacgcctggcctcatgaaattcacggctgcgcgcagatcaacagctgta |
566 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
3380438 |
accgtgtaaaatacacctgggtgtatttaaacagtggccaaaactgtctgtcacgcctggcctcatgaaattcacggctgggtgcagatcaacagctgta |
3380537 |
T |
|
| Q |
567 |
gaacttccttggagcgtgttttgacagcgaagaaagtcattgaattcccttcttttgttttctttccaaaatctttctgtcatgcctaggtgtgtaattt |
666 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3380538 |
gaacttccttggagcatgttttgacagcgaagaaagtcattgaattcccttcttttgttttctttccaaaatctttctgtcatgcctaggtgtgtaattt |
3380637 |
T |
|
| Q |
667 |
agagaacaagaccaccgacacatttgtttacattcaattacttc-attttaaaaaattgttaccggtttctacgtattccgatatcaaacatatgtgtga |
765 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
3380638 |
agagaacaagaccaccggcacatttgtttacattcaattacttctatttttaaaaattgttaccagtttctacgtattccgatatcaaacatatgtg-ga |
3380736 |
T |
|
| Q |
766 |
gaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcacac |
865 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3380737 |
gaaggaaatcattgcatcctctcactttcaaaactaaaacaaaacattgacttttgttgtccatcttcaaatatgatccaatgaagtccgccgttcacac |
3380836 |
T |
|
| Q |
866 |
atgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaagcactatacgctc |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3380837 |
atgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaagcactacacgctc |
3380936 |
T |
|
| Q |
966 |
gaacaccaaacggttggcccatctaacatgtttgttccacattatgatcacctttataatattcattagttttggtg-tgct-cttttctcaataaa-ga |
1062 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||| |||||||||||||| || |
|
|
| T |
3380937 |
gaacaccaaacggttggcccatctaacatgtttg-------ttgtgatcaccttt---atattcattagttttggtgttgctccttttctcaataaagga |
3381026 |
T |
|
| Q |
1063 |
aatagttaaacatgaattaactt |
1085 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
3381027 |
aatagttacacatgaattaactt |
3381049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 740 - 1040
Target Start/End: Complemental strand, 2904858 - 2904559
Alignment:
| Q |
740 |
tattccgatatc-aaacatatgtgt--gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaa |
836 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
2904858 |
tattccgatatccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttgttgaccatcttcaac |
2904759 |
T |
|
| Q |
837 |
tatgatccaatgaagaccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccg |
936 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2904758 |
tatgatccaatgtaatccgccattcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccg |
2904659 |
T |
|
| Q |
937 |
aacgtgtgtatctcaagcactatacgctcgaacaccaaacggttggcccatctaacatgtttgttccacattatgatcacctttataatattcattagtt |
1036 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2904658 |
agcgtgtgtatctcaagcactagacgctcgaacaccaaatcgttggcccgtctaacatgtttattccacattattatcacctt----atattcattagtt |
2904563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 764 - 1040
Target Start/End: Complemental strand, 2856715 - 2856443
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||| | |||||||| |||||||||||||| | | |||||||||| ||||||||||| |||| ||||| |
|
|
| T |
2856715 |
gagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccattcac |
2856616 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaagcactatacgc |
963 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||| |||| |
|
|
| T |
2856615 |
acatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtatctcgagcactacacgc |
2856516 |
T |
|
| Q |
964 |
tcgaacaccaaacggttggcccatctaacatgtttgttccacattatgatcacctttataatattcattagttttgg |
1040 |
Q |
| |
|
|| ||||||||||| ||| | | |||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2856515 |
tcaaacaccaaacgattgtctcgtctaacatatttgttccacattatgatcacctt----atattcattagttttgg |
2856443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 764 - 1040
Target Start/End: Complemental strand, 2874325 - 2874053
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||| | |||||||| |||||||||||||| | | |||||||||| ||||||||||| |||| ||||| |
|
|
| T |
2874325 |
gagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccattcac |
2874226 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaagcactatacgc |
963 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||| |||| |
|
|
| T |
2874225 |
acatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtatctcgagcactacacgc |
2874126 |
T |
|
| Q |
964 |
tcgaacaccaaacggttggcccatctaacatgtttgttccacattatgatcacctttataatattcattagttttgg |
1040 |
Q |
| |
|
|| ||||||||||| ||| | | |||||||| ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2874125 |
tcaaacaccaaacgattgtctcgtctaacatatttgttccatattatgatcacctt----atattcattagttttgg |
2874053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 764 - 1040
Target Start/End: Complemental strand, 2844888 - 2844616
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||| | |||||||| |||||||||||||| || ||||||||| ||||||||||| |||| ||||| |
|
|
| T |
2844888 |
gagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccccgtttcaaatataatccaatgaagtgcgccattcac |
2844789 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaagcactatacgc |
963 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| | |||||||||||| ||||||| |||| |
|
|
| T |
2844788 |
acatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttccaagcgtgtgtatctcgagcactacacgc |
2844689 |
T |
|
| Q |
964 |
tcgaacaccaaacggttggcccatctaacatgtttgttccacattatgatcacctttataatattcattagttttgg |
1040 |
Q |
| |
|
|| ||||||||||| ||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2844688 |
tcaaacaccaaacgattgtttcgtctaacatatttgttccacattatgatcacctt----atattcattagttttgg |
2844616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 2692625 - 2692545
Alignment:
| Q |
79 |
tatacaccttctaaagctgacataaccatttggagctccttgcatgaaaggtgaatttgaaaataaggctgttgctaactg |
159 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2692625 |
tatacaccttctaaagctgacataaccgtttggagctccttgcttgaaaggtgaatttgaaaataaagctgttgctaactg |
2692545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 661 - 740
Target Start/End: Original strand, 8867006 - 8867086
Alignment:
| Q |
661 |
taatttagagaacaagaccaccgacacatttgtttacattcaattacttc-attttaaaaaattgttaccggtttctacgt |
740 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
8867006 |
taatttagagaacacggccaccgacacatttgtttacattcaattacttctatttttaaaaaatgttaccggtttctacgt |
8867086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 456 - 585
Target Start/End: Original strand, 3380315 - 3380444
Alignment:
| Q |
456 |
aactaccttggaccgtgtaaaatacgcctgggcgtatttaaacagtggccaaaactgtctgtcacgcctggcctcatgaaattcacggctgcgcgcagat |
555 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||||| |||| | ||| ||||||||||||||||| |||| ||| ||| | ||| || |
|
|
| T |
3380315 |
aactaccttggagcgtgtaaactacgcctgggcgtatttgaacagtgcccaatcttctctatcacgcctggcctcatgcaattgacgcctgggtgcatat |
3380414 |
T |
|
| Q |
556 |
caacagctgtagaacttccttggagcgtgt |
585 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| |
|
|
| T |
3380415 |
caacagcttcagaactaccttggaccgtgt |
3380444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 40231035 - 40230907
Alignment:
| Q |
158 |
tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgtaaa-tattgcatattttattccattcataaatctattttctt |
255 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| |||| || ||||||| ||| | ||| |||||||||||||| |
|
|
| T |
40231035 |
tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt |
40230936 |
T |
|
| Q |
256 |
ccctatgagttccagtctcaatacgaata |
284 |
Q |
| |
|
||| |||||||| |||||||||| ||||| |
|
|
| T |
40230935 |
cccgatgagttctagtctcaataagaata |
40230907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 764 - 953
Target Start/End: Complemental strand, 1600125 - 1599939
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||| ||| ||| |||||| |||| | || | ||| || | ||||||||||| | || ||||| |
|
|
| T |
1600125 |
gagaaggaaatgactgcaacctctcactttcaaaacagaaaaccaatattgacatttgct---caccctcatatcttatccaatgaagtgcaccattcac |
1600029 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaag |
953 |
Q |
| |
|
||| ||||||||| |||| || ||||||||||||||||||||||||||| ||||||| | |||| |||||| | |||| ||||||||| |
|
|
| T |
1600028 |
acaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaag |
1599939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 764 - 935
Target Start/End: Complemental strand, 9074551 - 9074383
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||| ||| |||| |||||| |||| || || |||| || | ||||||||||| | || ||||| |
|
|
| T |
9074551 |
gagaaggaaatgactgcaacctctcactttcaaaacagaaaaacaatattgacctttgctg---attttcatatcttatccaatgaagtgcaccattcac |
9074455 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttcc |
935 |
Q |
| |
|
||| ||||||| | || |||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
9074454 |
acaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttcc |
9074383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 2679029 - 2678954
Alignment:
| Q |
84 |
accttctaaagctgacataaccatttggagctccttgcatgaaaggtgaatttgaaaataaggctgttgctaactg |
159 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||||| | |||||| || |||| |||||| |
|
|
| T |
2679029 |
accttcttaagctgacataaccatttggaactccttgcttgaaaggtgaattcgcaaataatgcagttgataactg |
2678954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 887 - 953
Target Start/End: Original strand, 8529338 - 8529404
Alignment:
| Q |
887 |
aaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaag |
953 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| | ||||||||||| | |||| ||||||||| |
|
|
| T |
8529338 |
aaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaag |
8529404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 764 - 851
Target Start/End: Original strand, 8644490 - 8644574
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaag |
851 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||||| || ||| ||| || |||| |||||| ||||||||||||| |
|
|
| T |
8644490 |
gagaaggaaatgattgcaacctctcactttcaaaacagaaacacaatatagacctttctt---catcctcaaatctgatccaatgaag |
8644574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 887 - 921
Target Start/End: Original strand, 8535902 - 8535936
Alignment:
| Q |
887 |
aaaaagaaatttgaggatccacttcaagatttctc |
921 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8535902 |
aaaaagaaatttgaggatccacttcaacatttctc |
8535936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 953
Target Start/End: Original strand, 9003809 - 9003928
Alignment:
| Q |
832 |
tcaaatatgatccaatgaagaccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg |
931 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||| || |||| ||| || ||| ||| | ||||||||||||||||| ||||||| |||||| || |
|
|
| T |
9003809 |
tcaaatctgatccaatgaagtgcgccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtg |
9003908 |
T |
|
| Q |
932 |
ttccgaacgtgtgtatctcaag |
953 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
9003909 |
ttccca--gtgtgtatctcaag |
9003928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 953
Target Start/End: Original strand, 8641726 - 8641847
Alignment:
| Q |
832 |
tcaaatatgatccaatgaagaccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg |
931 |
Q |
| |
|
|||||| |||| ||||||||| | | |||||||| ||||||| | ||| || ||| |||||| |||||||||||||||| ||||||| |||||| || |
|
|
| T |
8641726 |
tcaaatttgattcaatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtg |
8641825 |
T |
|
| Q |
932 |
ttccgaacgtgtgtatctcaag |
953 |
Q |
| |
|
||| | |||| ||||||||| |
|
|
| T |
8641826 |
ctccaagtgtgtttatctcaag |
8641847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 5e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 157 - 339
Target Start/End: Original strand, 16899505 - 16899687
Alignment:
| Q |
157 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899505 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
16899604 |
T |
|
| Q |
257 |
cctatgagttccagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899605 |
cctatgagttctagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
16899687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 157 - 339
Target Start/End: Original strand, 18348020 - 18348202
Alignment:
| Q |
157 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18348020 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
18348119 |
T |
|
| Q |
257 |
cctatgagttccagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348120 |
cctatgagttctagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
18348202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 764 - 953
Target Start/End: Original strand, 9443379 - 9443565
Alignment:
| Q |
764 |
gagaaggaaatgattgcatcctatcactttcaaaactaaaacacaacattgacttttgttgtccatcttcaaatatgatccaatgaagaccgccgttcac |
863 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| | ||| ||| |||||| |||| | |||| |||||| | ||||||||||| | || ||||| |
|
|
| T |
9443379 |
gagaaggaaatgactgcaacctctcactttcaaagcagaaaaccaatattgacctttgct---catcctcaaatcttatccaatgaagtgcaccattcac |
9443475 |
T |
|
| Q |
864 |
acatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttgttccgaacgtgtgtatctcaag |
953 |
Q |
| |
|
||| ||||||| | || || ||||||||||||||||||||||||||| ||||||| | ||||||||||| | |||| ||||||||| |
|
|
| T |
9443476 |
acaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaag |
9443565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 13236471 - 13236289
Alignment:
| Q |
157 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13236471 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttc |
13236372 |
T |
|
| Q |
257 |
cctatgagttccagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236371 |
cctatgagttctagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
13236289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 160 - 335
Target Start/End: Complemental strand, 6352442 - 6352268
Alignment:
| Q |
160 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352442 |
attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattccattcataaatctattttcttccct |
6352344 |
T |
|
| Q |
260 |
atgagttccagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaatt |
335 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
6352343 |
atgagttctagtctcaatacgaatactagttttatttactattcatatattaaaatttgaatctaccacaccaatt |
6352268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 10404067 - 10404203
Alignment:
| Q |
160 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404067 |
attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtttgtaaatattatatattttattccattcataaatctattttcttccct |
10404166 |
T |
|
| Q |
260 |
atgagttccagtctcaatacgaatactagttttattt |
296 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
10404167 |
atgatttctagtctcaataccaatactagttttattt |
10404203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 157 - 339
Target Start/End: Original strand, 512 - 691
Alignment:
| Q |
157 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
256 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
512 |
ctgattcgacattagaagtatattgatttttcaccactaaccgaatacttttgtctgtaactactatatatttgattccatccataaatctattttcttc |
611 |
T |
|
| Q |
257 |
cctatgagttccagtctcaatacgaatactagttttatttactgttcatatatttaaatttgaatttaccacaccaattcgtt |
339 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| ||||||||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
612 |
cctatgagttcgagtctcaataagaatgctagtt---cttactgttcatatgttatgatatgaatataccacaccaattcgtt |
691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 42203382 - 42203278
Alignment:
| Q |
157 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
256 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42203382 |
ctgattcgacattaaaagtatattgaatttttac-aataaccgaacacttttgtctgtaaatattgcatatattattccattcataaatctatttttttc |
42203284 |
T |
|
| Q |
257 |
cctatg |
262 |
Q |
| |
|
| |||| |
|
|
| T |
42203283 |
catatg |
42203278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 197952 - 197865
Alignment:
| Q |
159 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatc |
246 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
197952 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatccataaatc |
197865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 256387 - 256308
Alignment:
| Q |
159 |
gattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||| ||||| |||||||| |
|
|
| T |
256387 |
gattcgacattaaaagtatattgattctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatt |
256308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 950
Target Start/End: Original strand, 5012 - 5130
Alignment:
| Q |
832 |
tcaaatatgatccaatgaagaccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg |
931 |
Q |
| |
|
|||||| ||||||||||||| | || |||||||| |||||||||| ||| |||| ||||||||||||||||| | | ||||||| ||| || || |
|
|
| T |
5012 |
tcaaatctgatccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatg |
5111 |
T |
|
| Q |
932 |
ttccgaacgtgtgtatctc |
950 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
5112 |
ttccgagtgtgtgtatctc |
5130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 687 - 721
Target Start/End: Complemental strand, 41718907 - 41718873
Alignment:
| Q |
687 |
catttgtttacattcaattacttcattttaaaaaa |
721 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
41718907 |
catttgattacattcaattacttcattttaaaaaa |
41718873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 10412115 - 10412144
Alignment:
| Q |
337 |
gtttcttccgtttccgaatctatttcaaca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10412115 |
gtttcttccgtttccgaatctatttcaaca |
10412144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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