View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565-Insertion-11 (Length: 310)
Name: NF4565-Insertion-11
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-11 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 39562104 - 39561808
Alignment:
| Q |
7 |
aacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagatt |
106 |
Q |
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| T |
39562104 |
aacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagatt |
39562005 |
T |
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| Q |
107 |
aagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagc |
206 |
Q |
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| T |
39562004 |
aagatggtattaatatattcacaaaaggcacaactgagatattggatcaattttatactatacactatgttagtgctcaagg-------ataagagcagc |
39561912 |
T |
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| Q |
207 |
ttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaacacattaaaaatattctttaatct |
306 |
Q |
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| T |
39561911 |
ttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaacacattaaaaatattctttaatct |
39561812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 39566783 - 39566511
Alignment:
| Q |
7 |
aacaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagatt |
106 |
Q |
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| T |
39566783 |
aacaagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagatt |
39566684 |
T |
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| Q |
107 |
aagatggtattaatatattcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagc |
206 |
Q |
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| T |
39566683 |
aagatggtattaatatattcacaaagagcacaacttagatattggatcaattttatataatacactatgttagtgctcaa-------gaataagagcagc |
39566591 |
T |
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| Q |
207 |
ttcctggaaagcatttccaatttaccttttccacactatataatgcatcacataca--acaactcaaactcaaaccaaca |
284 |
Q |
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| T |
39566590 |
ttcctggaaagcatttccagtttactttttgcacactatataatacatcatatacaacacaactcaaactcaaacaaaca |
39566511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 39560749 - 39560558
Alignment:
| Q |
52 |
ttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactgagatattgg |
151 |
Q |
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| T |
39560749 |
ttttctttaataatatataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactgg |
39560650 |
T |
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| Q |
152 |
atcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataat |
250 |
Q |
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| T |
39560649 |
atcaattttatacaatatactatgttagtgttcaa-------agataagatcaacttcatggaaagcatttcctatttactttttccacactacataat |
39560558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 39572250 - 39572030
Alignment:
| Q |
44 |
tctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaagcacaactga |
143 |
Q |
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| T |
39572250 |
tctaaaggttttctacaataagatataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactga |
39572151 |
T |
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| Q |
144 |
gatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttccaatttaccttttccacact |
243 |
Q |
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| T |
39572150 |
gatactggacaaattttata------------ttagtgttcaaggataa-------gagcagcttcctgtaaagcatttccaatttactttttcaacact |
39572070 |
T |
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| Q |
244 |
atataatgcatcacatacaacaactcaaactcaaaccaac |
283 |
Q |
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| T |
39572069 |
atataatacatcacctacaacaattcaaactcaaaccaac |
39572030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 39584617 - 39584755
Alignment:
| Q |
9 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaa |
108 |
Q |
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| T |
39584617 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttagtaaaatataatcttgaacacaatctaatgcgcatgatttaagattaa |
39584716 |
T |
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| Q |
109 |
gatggtattaatatattcacaaaaagcacaactgagata |
147 |
Q |
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| T |
39584717 |
gttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 39580986 - 39581146
Alignment:
| Q |
9 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataag--atataatcttcaacacaatctc-------acgtgcatggtt |
99 |
Q |
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| T |
39580986 |
caagagcaaaattgtaaaatctagcctttcgagattctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgatt |
39581085 |
T |
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| Q |
100 |
taagattaagatggtattaatatattcacaaaaagcacaactgagatattggatcaatttt |
160 |
Q |
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| T |
39581086 |
caatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt |
39581146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 39574473 - 39574603
Alignment:
| Q |
8 |
acaagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataagat-ataatcttcaacacaatctcacgtgcatggtttaagatt |
106 |
Q |
| |
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|||||| || |||||||||||||| |||||| |||||| || |||||||||||||| ||| | |||||| | ||||||| | ||||||| ||||||||| |
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| T |
39574473 |
acaagatccgaattggaaaatccaccctttctagattccaa-ggttttctttaatatgattaaaatctttagaacaatctgatgtgcatg-tttaagatt |
39574570 |
T |
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| Q |
107 |
aagatggtattaatatattcacaaaaagcacaa |
139 |
Q |
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| T |
39574571 |
aatttggtattaaaatattcacaaaaagcacaa |
39574603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 39581181 - 39581249
Alignment:
| Q |
211 |
tggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaac |
279 |
Q |
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| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac |
39581249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 39584828 - 39584896
Alignment:
| Q |
212 |
ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac |
279 |
Q |
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| T |
39584828 |
ggaaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaac |
39584896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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