View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565-Insertion-3 (Length: 902)
Name: NF4565-Insertion-3
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 227 - 735
Target Start/End: Original strand, 49191245 - 49191761
Alignment:
| Q |
227 |
tgggagacaatcaaaagccaactgtgatctcattatatatgtttattgattgatactaatcaccaaggttgtaaaatagtgttgaattctctattaaagc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49191245 |
tgggagacaatcaaaagccaactgtgatctcattatatatgtttattgattgatactaatcaccaaggttgtaaaatagtgttgaattctctattaaagc |
49191344 |
T |
|
| Q |
327 |
ttttacggtgaca-------gagaacaaatcaagtagtccagttatttnnnnnnntgcaacttgactactccatataatagaatcaataatcaattgaat |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49191345 |
ttttacggtgacaaaaacaagagaacaaatcaagtagtccagttatttaaaaaaatgcaacttgactactccatataacagaatcaataatcaattgaat |
49191444 |
T |
|
| Q |
420 |
aaagtatgaagtattttnnnnnnnnnnnnnn-tagagtatatttacattagttatcaaaagtttcgtatccttaaaattactaatcttttatcacccatt |
518 |
Q |
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| T |
49191445 |
aaagtatgaagtatttaaaaaaaaaaaaaaaatagagtatatttacattagttatcaaaagttttgtatccttaaaattactaatcttttatcacccatt |
49191544 |
T |
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| Q |
519 |
gtccattgatcatgagtgtgaccgatttggttaaacctcaaaagggacagagtttaaagctcgatttaaacacataaatagatatgaatctcatcacata |
618 |
Q |
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| T |
49191545 |
gtccattgatcatgagtgtgaccgatttggttaaacctcaaaagggacagagtttaaagctcgatttaaacacataaatagatatgaatctcatcacata |
49191644 |
T |
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| Q |
619 |
tatgtcaacaactttaattaatcatagtgatttaatttctaatgaaaatataccaaactattgatcttgttgctagctagtaaaaatgaattgtattcaa |
718 |
Q |
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| T |
49191645 |
tatgtcaacaactttaattaatcatagtgatttaatttctaatgaaaatataacaaactattgatcttgttgctagctagtaaaaatgaattgtattcaa |
49191744 |
T |
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| Q |
719 |
aaattcattgtttgtac |
735 |
Q |
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| T |
49191745 |
aaattcattttttgtac |
49191761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 49191047 - 49191223
Alignment:
| Q |
8 |
ataccatccagaatttcaatcaccaaaaaagtgatccggtatagttacattatagtcaactaattgaaaaggccaagttaatcgatatgcacaatcgttc |
107 |
Q |
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| T |
49191047 |
ataccatccagaatttcaatcaccaaaaaagtgatccagtatagttacattatagtcaactaattgaaaaggccaagttaatcgatatgcacaatcgttc |
49191146 |
T |
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| Q |
108 |
atatatataatttatttattaggtctaataggtattaactattaatttcggcagaatcagttaagatttttccactt |
184 |
Q |
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| T |
49191147 |
atatatataatttatttactaggtctaataggtattaactattaatttcggcagaatcagttaagatttttccactt |
49191223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 500 - 711
Target Start/End: Original strand, 49202707 - 49202916
Alignment:
| Q |
500 |
taatcttttatcacccattgtccattgatcatgagtgtgaccgatttggttaaacctcaaaagggac--agagtttaaagctcgatttaaacacataaat |
597 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||| || ||||||||| |||||||||||||| || ||||||||| ||| |
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| T |
49202707 |
taatcttctatcacctattgtccattgatcaagagtgtgactcatttggttaaaacttaaaagggacaaagagtttaaagctcaatctaaacacatgaat |
49202806 |
T |
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| Q |
598 |
agatatgaatctcatcacatatatgtcaacaactttaattaatcatagtgatttaatttctaatgaaaatataccaaactattgatcttgttgctagcta |
697 |
Q |
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| T |
49202807 |
agataatagtatcattgcatatatgccaacaact----ttaatcacagtgatttaatttcctatcaaaacatatgaaattattaatcttgtacctagcta |
49202902 |
T |
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| Q |
698 |
gtaaaaatgaattg |
711 |
Q |
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||| ||| |||||| |
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| T |
49202903 |
gtataaaagaattg |
49202916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 817 - 902
Target Start/End: Original strand, 49191842 - 49191926
Alignment:
| Q |
817 |
ttgcatgtactaaactaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
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||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
49191842 |
ttgcatgtactaaactaaccttggtttcatatt-gaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaa |
49191926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 825 - 902
Target Start/End: Original strand, 49188114 - 49188190
Alignment:
| Q |
825 |
actaaactaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
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| T |
49188114 |
actaaactaaccttggtttcatatt-gaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaa |
49188190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 827 - 902
Target Start/End: Original strand, 49202958 - 49203032
Alignment:
| Q |
827 |
taaactaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
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| T |
49202958 |
taaactaaccttagtttcatatt-gaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaa |
49203032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 422
Target Start/End: Original strand, 49202463 - 49202617
Alignment:
| Q |
275 |
attgatactaatcaccaaggttgtaaaatagtgttgaattctctattaaagcttttacggtgaca---------gagaacaaatcaagtagtccagttat |
365 |
Q |
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|||||||| |||||||||||||||||||| |||| |||||||||| |||||||||| ||||| | |||||| |||||| |||||| |||| |
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| T |
49202463 |
attgatacctatcaccaaggttgtaaaatactgttaaattctctat-aaagcttttatggtgaaaaaaacaggagagaactaatcaaacagtccaattat |
49202561 |
T |
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| Q |
366 |
ttnnnnnnntgcaacttgactactccatataatagaatcaataatcaattgaataaa |
422 |
Q |
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| T |
49202562 |
ttaaaaaa-tgcaacttgacttctccatatagcagaatcaataatcaattgaataaa |
49202617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 830 - 902
Target Start/End: Original strand, 49212972 - 49213043
Alignment:
| Q |
830 |
actaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
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| T |
49212972 |
actaaccttagtttcatatt-gaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaa |
49213043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 856 - 902
Target Start/End: Original strand, 49208157 - 49208203
Alignment:
| Q |
856 |
ctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
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| T |
49208157 |
ctagctttgctaaggaaatcagctttaagcttctcagtagtagtcaa |
49208203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 817 - 902
Target Start/End: Original strand, 37030617 - 37030701
Alignment:
| Q |
817 |
ttgcatgtactaaactaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||| |||||| |||| ||||| ||| |||| |
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| T |
37030617 |
ttgcatggactaaactaaccttggtttcata-ttgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaa |
37030701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 817 - 893
Target Start/End: Original strand, 51824277 - 51824352
Alignment:
| Q |
817 |
ttgcatgtactaaactaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagt |
893 |
Q |
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||||||| ||||||||||||||||||||||| |||| | |||||||||||||| || ||||||||| |||||||||| |
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| T |
51824277 |
ttgcatggactaaactaaccttggtttcata-ttgaacactagctttgctaagtaaatcagctttaagcttctcagt |
51824352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 830 - 902
Target Start/End: Complemental strand, 32592694 - 32592623
Alignment:
| Q |
830 |
actaaccttggtttcatatttgacccctagctttgctaaggaactcagctttacgcttctcagttgtattcaa |
902 |
Q |
| |
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|||||||||||||||||| | || | |||||||||||||| || ||||||||| |||||||||| ||| |||| |
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| T |
32592694 |
actaaccttggtttcatact-gaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaa |
32592623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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