View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4565-Insertion-4 (Length: 746)

Name: NF4565-Insertion-4
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4565-Insertion-4
NF4565-Insertion-4
[»] chr1 (7 HSPs)
chr1 (35-737)||(3534058-3534762)
chr1 (477-556)||(3526970-3527049)
chr1 (132-212)||(9007773-9007854)
chr1 (127-169)||(12772146-12772188)
chr1 (127-172)||(15381849-15381894)
chr1 (123-168)||(44622808-44622853)
chr1 (197-242)||(52363015-52363060)
[»] chr4 (1 HSPs)
chr4 (150-242)||(924333-924425)
[»] chr3 (3 HSPs)
chr3 (132-191)||(55195845-55195904)
chr3 (127-190)||(8493282-8493345)
chr3 (127-191)||(40956664-40956730)
[»] chr6 (1 HSPs)
chr6 (132-192)||(15126293-15126353)
[»] chr7 (3 HSPs)
chr7 (132-174)||(34807844-34807886)
chr7 (140-191)||(38363211-38363264)
chr7 (127-169)||(45199858-45199900)
[»] chr5 (2 HSPs)
chr5 (127-169)||(4985833-4985875)
chr5 (126-242)||(9408928-9409045)


Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 35 - 737
Target Start/End: Complemental strand, 3534762 - 3534058
Alignment:
Q  35 caaagaatatgaagaaagatatgtaaattttatcnnnnnnnnccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtag 134  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534762 caaagaatatgaagaaagatatgtaaattttatcttttttttccttaacaaaaatatttgtgacaatcactatttggtttattatttattgatcaagtag 3534663  T
Q  135 tttaatggttagaaatcactttttaagatgaataaatgagttgttcggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagt 234  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  3534662 tttaatgattagaaatcactttttaagatgaataaatgagttgtttggagttcgaaccaaaaccctacatataacaattcattatttttgtctactgagt 3534563  T
Q  235 tatgttcaaagatacattattaggtttattatattctatgcaaaaacaatagacctgaatgattttcttctaaacaaaaacagacccgaattattatgat 334  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534562 tatgttcaaggatacattattaggtttattatattctatgcaaaaacaatagacctgaatgattttcttctaaacaaaaacagacccgaattattatgat 3534463  T
Q  335 ttatcctccctcttctgcttccttaattaacattgtaatgattaaattaaccaaaatgtgagataaacatatgttctttagtggattttggagatattat 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3534462 ttatcctccctcttctgcttccttaattaacattgtaatgattaaattaaccaaaatgtgagataaacatatgttctttagtggattttgaagatattat 3534363  T
Q  435 cacaacttactcctgtatatatctccattttgtcgtggttgcttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgc 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534362 cacaacttactcctgtatatatctccattttgtcgtggttgcttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgc 3534263  T
Q  535 atgaggtttggttttccccaccctacttaagaggcacggtgaaacctgaaattggggaccaaatacaaaagcatctacaccttctagtaggatggtccaa 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3534262 atgaggtttggttttccccaccctacttaagaggcacggtgaaacctgaaattggggaccaaatacaaaagcatctacaccttctagtaggatggtccaa 3534163  T
Q  635 gtatgggacactcacatgtacac--tagtttgggagacaaattagttgttaatcatcaaagcatgtcgcacacctgcttgatttccattaactccatcat 732  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3534162 gtatgggacactcacatgtacactatagtttgggagacaaattaattgttaatcatcaaagcatgtcgcacacctgcttgatttccattaacttcatcat 3534063  T
Q  733 attta 737  Q
    |||||    
T  3534062 attta 3534058  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 477 - 556
Target Start/End: Complemental strand, 3527049 - 3526970
Alignment:
Q  477 ttcaatcttcaactaattaccaaacacaatcgtaggattcatcaccaaaactgtatgcatgaggtttggttttccccacc 556  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||||||   |||||||||| |||||||||||||||    
T  3527049 ttcaatcttcaactaattaccaagcacaatcgtgggattcatcaacaaaacctcatgcatgaggcttggttttccccacc 3526970  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 9007773 - 9007854
Alignment:
Q  132 tagtttaatggttagaaatcacttttt-aagatgaataaatgagttgttcggagttcgaaccaaaaccctacctataacaat 212  Q
    ||||||| ||| ||||| ||||||||| ||| |||||||||||| ||||||| ||||||| |  |||||||| |||||||||    
T  9007773 tagtttattggctagaattcactttttcaaggtgaataaatgagatgttcggggttcgaatcccaaccctacatataacaat 9007854  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 12772188 - 12772146
Alignment:
Q  127 tcaagtagtttaatggttagaaatcactttttaagatgaataa 169  Q
    |||||||||||||||||||||| |||| ||||||| |||||||    
T  12772188 tcaagtagtttaatggttagaattcaccttttaaggtgaataa 12772146  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 15381849 - 15381894
Alignment:
Q  127 tcaagtagtttaatggttagaaatcactttttaagatgaataaatg 172  Q
    |||| |||||||||| |||||| |||||||||||||| ||||||||    
T  15381849 tcaaatagtttaatgattagaattcactttttaagataaataaatg 15381894  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 44622808 - 44622853
Alignment:
Q  123 ttgatcaagtagtttaatggttagaaatcactttttaagatgaata 168  Q
    ||||||||||||| |||| ||||||| | |||||||||||||||||    
T  44622808 ttgatcaagtagtataattgttagaatttactttttaagatgaata 44622853  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 52363060 - 52363015
Alignment:
Q  197 ccctacctataacaattcattatttctgtcaactgagttatgttca 242  Q
    |||||| ||||||||| |||||||||||||||||||  ||||||||    
T  52363060 ccctacatataacaatgcattatttctgtcaactgaactatgttca 52363015  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 924333 - 924425
Alignment:
Q  150 tcactttttaagatgaataaatgagttgttcggagttcgaaccaaaaccctacctataacaattcattatttctgtcaactgagttatgttca 242  Q
    |||||||||||| |||||||||||  ||||| | |||||||||  | ||||   ||||||||| |||||| ||||||||||||| ||||||||    
T  924333 tcactttttaaggtgaataaatgaaatgttcagggttcgaaccttatccctgtatataacaatacattatctctgtcaactgagatatgttca 924425  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 55195845 - 55195904
Alignment:
Q  132 tagtttaatggttagaaatcactttttaagatgaataaatgagttgttcggagttcgaac 191  Q
    |||| ||||||||| || |||| || ||||||||||||||||| ||||||||||||||||    
T  55195845 tagtctaatggttataattcaccttataagatgaataaatgaggtgttcggagttcgaac 55195904  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 8493345 - 8493282
Alignment:
Q  127 tcaagtagtttaatggttagaaatcactttttaagatgaataaatgagttgttcggagttcgaa 190  Q
    |||||||||||||| | ||||| |||| ||||||| ||||||| | || |||||||||||||||    
T  8493345 tcaagtagtttaatagctagaattcaccttttaaggtgaataagtaaggtgttcggagttcgaa 8493282  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 40956664 - 40956730
Alignment:
Q  127 tcaagtagtttaatggttagaaatcac--tttttaagatgaataaatgagttgttcggagttcgaac 191  Q
    |||||||||||| ||||||||| ||||  |||||||| |||||||||||| ||| ||| ||||||||    
T  40956664 tcaagtagtttagtggttagaattcaccttttttaagctgaataaatgaggtgtccggggttcgaac 40956730  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 15126353 - 15126293
Alignment:
Q  132 tagtttaatggttagaaatcactttttaagatgaataaatgagttgttcggagttcgaacc 192  Q
    ||||||||||||||||| |||| || |||| |||||||||| | ||| |||||||||||||    
T  15126353 tagtttaatggttagaattcaccttataaggtgaataaatggggtgtccggagttcgaacc 15126293  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 34807886 - 34807844
Alignment:
Q  132 tagtttaatggttagaaatcactttttaagatgaataaatgag 174  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  34807886 tagtttaatggttagaattcattttttaagatgaataactgag 34807844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 38363264 - 38363211
Alignment:
Q  140 tggttagaaatcac--tttttaagatgaataaatgagttgttcggagttcgaac 191  Q
    ||||||||| ||||  ||||||||||||||||||||| |||||||| |||||||    
T  38363264 tggttagaattcaccttttttaagatgaataaatgaggtgttcggaattcgaac 38363211  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 45199858 - 45199900
Alignment:
Q  127 tcaagtagtttaatggttagaaatcactttttaagatgaataa 169  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||    
T  45199858 tcaagtagtctaatggttagaattcactttttaaaatgaataa 45199900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 4985875 - 4985833
Alignment:
Q  127 tcaagtagtttaatggttagaaatcactttttaagatgaataa 169  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||    
T  4985875 tcaagtagtctaatggatagaattcactttttaagatgaataa 4985833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 9408928 - 9409045
Alignment:
Q  126 atcaagtagtttaatggttagaaatcactttttaagatgaataaatgagttgttcggagttcgaac-caaaaccctacctataacaattcattatttctg 224  Q
    |||| |||||||| ||||||||| |||  || |||| |||||||||||| ||| ||| |||||||| |  | |||| | ||||||||| |||| |  |||    
T  9408928 atcaggtagtttagtggttagaattcatcttataagttgaataaatgaggtgtccggggttcgaactccgacccctgcatataacaatgcattgtccctg 9409027  T
Q  225 tcaactgagttatgttca 242  Q
     |||||||||||||||||    
T  9409028 ccaactgagttatgttca 9409045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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