View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4565-Insertion-6 (Length: 642)
Name: NF4565-Insertion-6
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-6 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 295 - 642
Target Start/End: Complemental strand, 5776913 - 5776566
Alignment:
| Q |
295 |
gaagatttcttgttgtggatatagttggtggagaatttggctgaggttgttgaacatggaaacccggatcagcaatcagatgcattggtatgactttttc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5776913 |
gaagatttcttgttgtggatatagttggtggagaatttggctgaggttgttgaacatggaaacccggatcagcaatcagatgcattggtatgactttttc |
5776814 |
T |
|
| Q |
395 |
tatgtaacactcacacttatgatacgacacccacacatgtgattaagttgaattaatttatttaatcaatannnnnnnnnacgggtgtcagagtgtagtg |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5776813 |
tatgtaacactcacacttatgatacgacacccacacatgtgattaagttgaattaatttatttaatcaatatttttttttacgggtgtcagagtgtagtg |
5776714 |
T |
|
| Q |
495 |
tcatgtctgattcataaggctttttattaattcgtctcatggttatttatttgaatttgaatacattactcattatgttaattttgttggttgaagatca |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5776713 |
tcatgtctgattcataaggctttttattaattcgtctcatggttatttatttgaatttgaatacattactcattatgttaattttgttggttgaagatca |
5776614 |
T |
|
| Q |
595 |
ctgaattgagcaatcattttgagaagtgtcagcagctgttaaactcaa |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5776613 |
ctgaattgagcaatcattttgagaagtgtcagcagctgttaaactcaa |
5776566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 5777025 - 5776960
Alignment:
| Q |
183 |
aatcttcatcaatcactcgcttctcactttcatctcttaaatgcatgttaaccccttcaaaaaccc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5777025 |
aatcttcatcaatcactcgcttctcactttcatctcttaaatgtatgttaaccccttcaaaaaccc |
5776960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 460
Target Start/End: Complemental strand, 4752549 - 4752511
Alignment:
| Q |
422 |
cacccacacatgtgattaagttgaattaatttatttaat |
460 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4752549 |
caccgacacatgtgattaagttgaattaattcatttaat |
4752511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3453 times since January 2019
Visitors: 8698