View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565-Insertion-7 (Length: 604)
Name: NF4565-Insertion-7
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Complemental strand, 52713086 - 52712490
Alignment:
| Q |
8 |
aaattgaataatgtgttgagcaagcaataaaatagtgtggcaatgcatgtgtaaattaaatctaattattttatttttcatagcttggaagtattgtttt |
107 |
Q |
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| T |
52713086 |
aaattgaataatgtgttgagcaagcaataaaatagtgtggcaatgcatgtgtaaattaaatctaattattttatttttcatagcttggaagtattgtttt |
52712987 |
T |
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| Q |
108 |
aagaaaacgcagtacaagcatctaaaatcctaaaacaatcctaaaattctaaaacatgtgcattgatactaagtgcatttgatcactgatttatttattt |
207 |
Q |
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| T |
52712986 |
aagaaaacgcagtacaagcatataaaatcctaaaacaatcctaaaattctaaaacatgtgcattgatactaagtgcatttgatcactgatttatttattt |
52712887 |
T |
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| Q |
208 |
tttgaaagaacaaaatccctgatttattaactaacctgtattgtcgtgtgtgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctc |
307 |
Q |
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| T |
52712886 |
tttgaaagaacaaaatccctgatttattaactaacctgtattgtcgtgtgtgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctc |
52712787 |
T |
|
| Q |
308 |
gtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaagggcttcccattgcc |
407 |
Q |
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| T |
52712786 |
gtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaagggcttcccattggc |
52712687 |
T |
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| Q |
408 |
ttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttat |
507 |
Q |
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| T |
52712686 |
ttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttat |
52712587 |
T |
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| Q |
508 |
cttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttcttt |
604 |
Q |
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| T |
52712586 |
cttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttcttt |
52712490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 173 - 604
Target Start/End: Complemental strand, 52721742 - 52721311
Alignment:
| Q |
173 |
atactaagtgcatttgatcactgatttatttattttttgaaagaacaaaatccctgatttattaactaacctgtattgtcgtgtgtgaggaagcttgcga |
272 |
Q |
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| T |
52721742 |
atactaagtgcatttgatcactgatttatttattttttggaagaaaaatatccctgatttattaactaacctgtattgtcgtgtgtgaggaagcttgcga |
52721643 |
T |
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| Q |
273 |
gcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataa |
372 |
Q |
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| T |
52721642 |
gcgccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataa |
52721543 |
T |
|
| Q |
373 |
cctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgt |
472 |
Q |
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| T |
52721542 |
cctgaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgt |
52721443 |
T |
|
| Q |
473 |
gggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaa |
572 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52721442 |
gggtattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaa |
52721343 |
T |
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| Q |
573 |
ttaaagaaagcgtatttcttttggacttcttt |
604 |
Q |
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| T |
52721342 |
ttaaagaaagcgtatttctgttggacttcttt |
52721311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 237 - 604
Target Start/End: Complemental strand, 52699038 - 52698671
Alignment:
| Q |
237 |
actaacctgtattgtcgtgtgtgaggaagcttgcgagcgccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggaga |
336 |
Q |
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| T |
52699038 |
actaacctgtattggagagtgtggggaagcttgcgagcaccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgaga |
52698939 |
T |
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| Q |
337 |
ctcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggc |
436 |
Q |
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| T |
52698938 |
ctcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaac |
52698839 |
T |
|
| Q |
437 |
agctagaacaacaatagataaaaccgtagttattgtgggaattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattcca |
536 |
Q |
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|| | | ||| ||||||| || ||||||||||||||| | | |||||||||||| |||||||| || | |||| ||||||||||| || |||||| |
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| T |
52698838 |
ggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattcca |
52698739 |
T |
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| Q |
537 |
agaagagcacccatgttgatagcaaagaaaaaccaattaaagaaagcgtatttcttttggacttcttt |
604 |
Q |
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||||| |||||||||||||| |||||| |||||||||||||||||| | ||||| ||||||||||||| |
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| T |
52698738 |
agaagggcacccatgttgatggcaaagtaaaaccaattaaagaaagagaatttcatttggacttcttt |
52698671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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