View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565-Insertion-8 (Length: 543)
Name: NF4565-Insertion-8
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-8 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 286 - 540
Target Start/End: Complemental strand, 441423 - 441168
Alignment:
| Q |
286 |
gtgcttgtttggttgcacggtgggtgtttccaaactcaagtctacaacattcaaatgcaatttgatcaaaatatttatgtt-ggctttaaaaaa-ggtaa |
383 |
Q |
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| T |
441423 |
gtgcttgtttggttgcacggtgggtgcttccaaactcacatctacaacattcaaacgcaatttgatcaaaatatttttgtttggctttaaaaaacggtaa |
441324 |
T |
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| Q |
384 |
attgcttctgaatagcaaccgcacgtttaccagactctagtattcgaagcttttgcggtaagccaaatcaattctacacttttgttaaacaattatatta |
483 |
Q |
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| T |
441323 |
attgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacacttttgttaaacagttatatta |
441224 |
T |
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| Q |
484 |
gataatattccagtttgtctactatgtccttacctttttattatatgtaagccatga |
540 |
Q |
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| T |
441223 |
tataatattccagtttgtctattttgtcctt-gtttttttttatatgtaagccatga |
441168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 286 - 466
Target Start/End: Original strand, 252079 - 252260
Alignment:
| Q |
286 |
gtgcttgtttggttgcacggtgggtgtttccaaactcaagtctacaacattcaaatgcaatttgatcaaaatatttatgtt-ggctttaaaaaaggtaaa |
384 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
252079 |
gtgcttgtttggttgcacggtgggtgcttccaaactcacgtctacaacattcaaacgcaatttgatcaaaatatttatgtttggctttaaaaaaggtaaa |
252178 |
T |
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| Q |
385 |
ttgcttctgaatagcaaccgcacgtttaccagactctagtattcgaagcttttgcggtaagccaaatcaattctacactttt |
466 |
Q |
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| T |
252179 |
ttgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacactttt |
252260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 286 - 466
Target Start/End: Complemental strand, 14565296 - 14565115
Alignment:
| Q |
286 |
gtgcttgtttggttgcacggtgggtgtttccaaactcaagtctacaacattcaaatgcaatttgatcaaaatatttatgtt-ggctttaaaaaaggtaaa |
384 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14565296 |
gtgcttgtttggttgcacggtgggtgcttccaaactcacgtctacaacattcaaacgcaatttgatcaaaatatttatgtttggctttaaaaaaggtaaa |
14565197 |
T |
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| Q |
385 |
ttgcttctgaatagcaaccgcacgtttaccagactctagtattcgaagcttttgcggtaagccaaatcaattctacactttt |
466 |
Q |
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| T |
14565196 |
ttgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaattctacactttt |
14565115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 291 - 540
Target Start/End: Complemental strand, 45781605 - 45781342
Alignment:
| Q |
291 |
tgtttggttgcacggtgggtgtttccaaactcaagtctacaacattcaaatgcaatttgatcaaaatatttatgttgg-ctttaaaaaaggtaaattgct |
389 |
Q |
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|||||| ||||||||| |||| ||||||||||| || ||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||||||||||| | |
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| T |
45781605 |
tgtttgattgcacggtaggtgcttccaaactcacgtttacaacaatcaaacacaattttatcaaaatatttatgtttgacttaaaaaaaggtaaattgtt |
45781506 |
T |
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| Q |
390 |
tctgaatagcaaccgcacgtttaccagactctagtattcgaagcttttgcggtaagccaaatcaattctacacttttgttaaacaat------------t |
477 |
Q |
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| T |
45781505 |
tctgaatagcaaccacacgtttaccagactctaacatttgaagcttttgcggtgaaccaaatcaattctatatttttattaaacaattctacactctagt |
45781406 |
T |
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| Q |
478 |
atattagataatattccagtttgtctactatgtccttac-ctttttattatatgtaagccatga |
540 |
Q |
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| T |
45781405 |
atattatataatattccagtttgtctattatgtccttgcttttttttttatatgtaaaccatga |
45781342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 8040863 - 8040935
Alignment:
| Q |
429 |
gaagcttttgcggtaagccaaatcaattctacacttttgttaaacaattatattagataatattccagtttgt |
501 |
Q |
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| T |
8040863 |
gaagcttatgcggcaaccaaactcaattctactcttttattaaacaattattttatataatatccctgtttgt |
8040935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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