View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565-Insertion-9 (Length: 407)
Name: NF4565-Insertion-9
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 8420811 - 8421210
Alignment:
| Q |
7 |
atctacctataataatttgataacacacaattaggaagagactgagaacatttcctacactctgctgcacaaaacaaaacaacatacacgctcacctcct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8420811 |
atctacctataataatttgataacacacaattaggaagagactgagaacatttcctactctctgctgcacaaaacaaaacaacatacacgctcacctcct |
8420910 |
T |
|
| Q |
107 |
ctaaaagatctgtatagtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8420911 |
ctaaaagatctgtatagtgccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgc |
8421010 |
T |
|
| Q |
207 |
tatttcaaatacatctaaagccattcccaataacaattgagcaagaaaagtgtaacataccctctctacataactcacgtcaaactcctcttgttagacc |
306 |
Q |
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| T |
8421011 |
tatttcaaatacatctaaagccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagacc |
8421110 |
T |
|
| Q |
307 |
agaaaagaaaaagataaatttgtgattatactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagcccttact |
406 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
8421111 |
tgaaaagaaaaacataaatttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagaccttact |
8421210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 404
Target Start/End: Complemental strand, 49171286 - 49170906
Alignment:
| Q |
25 |
gataacacacaattaggaagagactgagaacatttcctacactctgctgcacaaaacaaaacaacatacacgctcacctcctctaaaagatctgtatagt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49171286 |
gataacacacaattaggaagagactgagaacatttcctactctctgctgcacaaaacaaaacaacatacacgctcacctcctctaaaagatctttatagt |
49171187 |
T |
|
| Q |
125 |
gccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatctaa |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49171186 |
gccataatataattaatcaccactttgttttcaatttattctacttgagttcatgagtttcattcttcaattttagccttgctatttcaaatacatctaa |
49171087 |
T |
|
| Q |
225 |
agccattcccaataacaattgagcaagaaaagtgtaacataccctctctacataactcacgtcaaactcctcttgttagaccagaaaaga-aaaagataa |
323 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
49171086 |
agccattgccaatcacaattgagcaagaaaagtgtaacctaccctctctacataactcacgtcaaactcctcttgttagaccagaaaagaaaaaacataa |
49170987 |
T |
|
| Q |
324 |
atttgtgattatactctttggcatgtggtcctttctttactatctgtaaacaacaaagttttagagacaaccaagccctta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
49170986 |
atttgtgattatactctttggcatgtggtcctttctttactatctgcaaacaacaaagttttagagacaaccaagccctta |
49170906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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