View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_high_10 (Length: 257)
Name: NF4565_high_10
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 42796297 - 42796543
Alignment:
| Q |
1 |
aatgaatatattgtaggtggtcacattaacccagcagtgacatttgggctatttttggctcgtaaggtgtctttgatcagagcaattatgtacatggtgg |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42796297 |
aatgaatctattgtaggtggtcacattaacccagcagtgacatttgggctatttttggctcgtaaggtgtctttgatcagagcaattatgtacatggtgg |
42796396 |
T |
|
| Q |
101 |
ctcagtgtttaggagctattgctggagttgggttggttaaggcttttcaaagtgcttactttgatagatatggtggtggtgctaattttctccatgatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42796397 |
ctcagtgtttaggagctattgctggagttgggttggttaaggcttttcaaagtgcttactttgatagatatggtggtggtgctaattttctccatgatgg |
42796496 |
T |
|
| Q |
201 |
ttacagtaccggtgttggattaggtgctgagattgttggtacctttg |
247 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42796497 |
ttacagtactggtgttggattaggtgctgagattgttggtacctttg |
42796543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 40835400 - 40835288
Alignment:
| Q |
37 |
gtgacatttgggctatttttggctcgtaaggtgtctttgatcagagcaattatgtacatggtggctcagtgtttaggagctattgctggagttgggttgg |
136 |
Q |
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|
|||||||||||||||||| |||| | |||||||| ||||| ||||| | | |||||||| ||||||||||||||||| || ||| ||||| ||| |
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| T |
40835400 |
gtgacatttgggctatttctggcgaggaaggtgtcattgattagagctgtattatacatggtagctcagtgtttaggagcaatatgtggtgttggactgg |
40835301 |
T |
|
| Q |
137 |
ttaaggcttttca |
149 |
Q |
| |
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||||||||||||| |
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| T |
40835300 |
ttaaggcttttca |
40835288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 35230420 - 35230376
Alignment:
| Q |
15 |
aggtggtcacattaacccagcagtgacatttgggctatttttggc |
59 |
Q |
| |
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|||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
35230420 |
aggtggtcacataaatccagcagtcacatttgggctatttttggc |
35230376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 4482910 - 4482878
Alignment:
| Q |
15 |
aggtggtcacattaacccagcagtgacatttgg |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
4482910 |
aggtggtcacattaacccagcagtgacatttgg |
4482878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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