View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_high_13 (Length: 239)
Name: NF4565_high_13
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42845458 - 42845679
Alignment:
| Q |
1 |
tccttagaagtaatcatgacgcgatgcaatgattgtaatttgaaaatgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgtta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845458 |
tccttagaagtaatcatgacgcaatgcaatgattgtaatttgaaaatgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgtta |
42845557 |
T |
|
| Q |
101 |
aagcctcatcaagtggttcctcaaagaataagcttgagttcttcaacagtctgaaagccaagctccaattgtccattcttacagcatcgtatcccaagtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845558 |
aagcctcatcaagtggttcctcaaagaataagcttgagttcttcaacagtctgaaagccaagctccaattgtccattcttacagcatcgtatcccaagtc |
42845657 |
T |
|
| Q |
201 |
tctcttcggcagcatggtaatt |
222 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
42845658 |
cctcttcggcagcatggtaatt |
42845679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 41979474 - 41979603
Alignment:
| Q |
1 |
tccttagaagtaatcatgacgcgatgcaatgattgtaatttgaaaatgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgtta |
100 |
Q |
| |
|
|||||||||| |||||||| || || ||||| |||||||||||||||||| |||||| |||| | ||||| |||| ||||| || ||| ||| |
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| T |
41979474 |
tccttagaagcaatcatgaagcaattcaatggccataatttgaaaatgacccccaactctgaagtccatgaagtcaacttctataaccctctcaatgttg |
41979573 |
T |
|
| Q |
101 |
aagcctcatcaagtggttcctcaaagaata |
130 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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| T |
41979574 |
aagcctcatcaagtggctcctcaaagaata |
41979603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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