View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_high_15 (Length: 227)
Name: NF4565_high_15
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 47455777 - 47455888
Alignment:
| Q |
110 |
gtgaaccaatttgcaaattgtagagacctatctctnnnnnnntaatttttaggaaccaatattttgtaaatcagcagcgagtttagaatttgcaaatttt |
209 |
Q |
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| T |
47455777 |
gtgaaccaatttgcaaattgtagggacctatctctaaaaaaataatttttaggaaccaatattttgtaaatcagcagcgagtttagaatttgcaaatttt |
47455876 |
T |
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| Q |
210 |
tcgtaatgtttt |
221 |
Q |
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|||| ||||||| |
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| T |
47455877 |
tcgtgatgtttt |
47455888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 47455680 - 47455776
Alignment:
| Q |
1 |
aattttggcagtatattttgtggatagacaaactgtc-------------acatagatatttccaatataagagttttaaaagttttcaaaaagtta |
84 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47455680 |
aattttggcagtatattttgtggatagacaaactgtctccctgttagtcaacatagatatttccaatataagagttttaaaagttttcaaaaagtta |
47455776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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