View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_high_16 (Length: 220)
Name: NF4565_high_16
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4565_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 42796158 - 42795987
Alignment:
Q |
30 |
ccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttttataccaatattgtgagttttcagtgatacgaaggactcaaaaggaac |
129 |
Q |
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T |
42796158 |
ccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttttataccaatattgtgagttt-cagtgatactaaggactcaaaaggaac |
42796060 |
T |
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Q |
130 |
aaggagatctgaagagaaaggagtgaagaaaaagaaacctgaaattccagcagtgcagtaaacaaggacaaag |
202 |
Q |
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T |
42796059 |
aaggagatctgaagagaaaggagtgaagaaaaagaaacctgaaattccagcagtgcagtaaacaaggacaaag |
42795987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 41452785 - 41452828
Alignment:
Q |
28 |
gtccgtaagccctaactcaactgacaataccgatattgttaggt |
71 |
Q |
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T |
41452785 |
gtccgtaagacctaactcaactgacaatagcgagattgttaggt |
41452828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 9559180 - 9559127
Alignment:
Q |
28 |
gtccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttt |
81 |
Q |
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T |
9559180 |
gtccgtaaggcctagctcaattgacaatactgatattgttaggttgaacacttt |
9559127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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