View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_high_2 (Length: 398)
Name: NF4565_high_2
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 398
Target Start/End: Complemental strand, 3915892 - 3915492
Alignment:
| Q |
9 |
agcagagagagactacgacagtttacaagcgacgtcacgtccccagttaagtcattgttttcaagtctcctacattttatttcaaaccaagtaaattaaa |
108 |
Q |
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||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3915892 |
agcagagagagactaagacaatttacaagtgatgtcacgtccccagttaagtcattgttttcaagtctcctacattttatttcaaaccaagtaaat-aaa |
3915794 |
T |
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| Q |
109 |
aagggaaaagaaaattcagcaattttatgaagaactaacacacaataaacactgaaga-gatat---aaaaacagcttacaatgatgctatgctctgaag |
204 |
Q |
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|||||||||||||||||| ||||| |||||| ||| || ||||||||||| |||| | ||| | ||||||||||||||||||||||||||||||||| |
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| T |
3915793 |
aagggaaaagaaaattcaacaattctatgaaaaaccaatgcacaataaacattgaaaaagattttaaaaaaacagcttacaatgatgctatgctctgaag |
3915694 |
T |
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| Q |
205 |
ctgaccaagttctacaggaatcatctcagagagttggttatgagaaagatcgctg-cacataaaagcaaatagaataatcaagggaataaaacatat--- |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||| || |
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| T |
3915693 |
ctgaccaagttctacaggaatcatctcagagagttggttatgggaaagatcactgccacatagaagcaaatagaataatcaagggaataaaacaaataaa |
3915594 |
T |
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| Q |
301 |
---atagttaaaattttcattagaaaaatatataacttcaatttccatgatac-tttgagattaccaaactctgcgagaatatgtcatgttaaattgttt |
396 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
3915593 |
ctaatacttaaaattttcattagaaaaatatataacttacatttccatgatacttttgagattaccaaactctgcgggaataggtcctgttaaattgttt |
3915494 |
T |
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| Q |
397 |
ct |
398 |
Q |
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| T |
3915493 |
ct |
3915492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 34959409 - 34959488
Alignment:
| Q |
9 |
agcagagagagactacgacagtttacaagcgacgtcacgtccccagttaagtcattgttttcaagtctcctacattttat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34959409 |
agcagagagagactacgacagtttacaagcgacgtcacgtccccagttaagtcattgttttcaagtctcctacattttat |
34959488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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