View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4565_high_7 (Length: 281)

Name: NF4565_high_7
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4565_high_7
NF4565_high_7
[»] chr5 (2 HSPs)
chr5 (6-255)||(41722654-41722903)
chr5 (10-240)||(34359437-34359667)
[»] chr4 (4 HSPs)
chr4 (6-239)||(48697661-48697894)
chr4 (6-239)||(30946023-30946256)
chr4 (6-249)||(42270147-42270390)
chr4 (13-146)||(2003134-2003267)
[»] chr8 (3 HSPs)
chr8 (6-249)||(9439921-9440164)
chr8 (6-146)||(24594424-24594564)
chr8 (205-242)||(24594367-24594404)
[»] chr3 (4 HSPs)
chr3 (6-249)||(54545389-54545632)
chr3 (6-252)||(5819102-5819348)
chr3 (6-146)||(42589192-42589332)
chr3 (205-242)||(42589352-42589389)
[»] chr6 (8 HSPs)
chr6 (6-252)||(26976720-26976966)
chr6 (6-249)||(27874539-27874782)
chr6 (6-237)||(18967312-18967543)
chr6 (124-240)||(21966493-21966604)
chr6 (13-146)||(1472398-1472531)
chr6 (180-240)||(30968569-30968629)
chr6 (9-106)||(21965628-21965725)
chr6 (205-242)||(1472341-1472378)
[»] chr2 (3 HSPs)
chr2 (6-241)||(829723-829958)
chr2 (6-241)||(28715317-28715550)
chr2 (13-242)||(13840763-13840995)
[»] scaffold0074 (1 HSPs)
scaffold0074 (6-237)||(27877-28108)
[»] chr7 (5 HSPs)
chr7 (18-237)||(2323956-2324175)
chr7 (13-146)||(7504696-7504829)
chr7 (43-244)||(22510198-22510398)
chr7 (16-145)||(37957033-37957162)
chr7 (205-242)||(7504639-7504676)
[»] chr1 (2 HSPs)
chr1 (7-107)||(34973726-34973826)
chr1 (138-239)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 41722654 - 41722903
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722654 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 41722753  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722754 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 41722853  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataag 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722854 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataag 41722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 34359437 - 34359667
Alignment:
Q  10 ggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagc 109  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  34359437 ggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagc 34359536  T
Q  110 cgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcaca 209  Q
    |||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||    
T  34359537 cgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcaca 34359636  T
Q  210 aaagtgactttaagtgggagattgtgaacat 240  Q
    |||||||||||||||||||||||||||||||    
T  34359637 aaagtgactttaagtgggagattgtgaacat 34359667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 48697894 - 48697661
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697894 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 48697795  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  ||||    
T  48697794 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagct 48697695  T
Q  206 cacaaaagtgactttaagtgggagattgtgaaca 239  Q
    ||||||||||||||||||||||||||||||||||    
T  48697694 cacaaaagtgactttaagtgggagattgtgaaca 48697661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 30946256 - 30946023
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946256 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 30946157  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||||||||  ||||    
T  30946156 aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagct 30946057  T
Q  206 cacaaaagtgactttaagtgggagattgtgaaca 239  Q
    ||||||||||||||||||||||||| ||||||||    
T  30946056 cacaaaagtgactttaagtgggagactgtgaaca 30946023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 42270147 - 42270390
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  42270147 cataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 42270246  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |  ||    
T  42270247 aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact 42270346  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42270347 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 42270390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 2003134 - 2003267
Alignment:
Q  13 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 112  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |    
T  2003134 gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 2003233  T
Q  113 tcaacactgataagtttgtatggtgtcgatcctc 146  Q
    ||||   ||| || |||  |||||||||||||||    
T  2003234 tcaatgttgacaaatttacatggtgtcgatcctc 2003267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 9440164 - 9439921
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  9440164 cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 9440065  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||    
T  9440064 aagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatact 9439965  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9439964 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 9439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 24594564 - 24594424
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||    
T  24594564 cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgaca 24594465  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctc 146  Q
    ||| | |||||  |||| || |||  ||||||| |||||||    
T  24594464 aagtcaatcaatgctgacaaatttacatggtgtagatcctc 24594424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
Q  205 tcacaaaagtgactttaagtgggagattgtgaacatgt 242  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  24594404 tcacaaaagtgactttaagtgggagattgtgaagatgt 24594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 54545389 - 54545632
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  54545389 cataggcgttcaatatcattttattcgagaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgtaatgaca 54545488  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||| | |||    
T  54545489 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgct 54545588  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54545589 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 54545632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5819348 - 5819102
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||    
T  5819348 cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagttgtaatgaca 5819249  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||    
T  5819248 aagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct 5819149  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 252  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  5819148 cacaaaagtaactttaagtgggagattgtgaacatgtgtgaacacat 5819102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 42589192 - 42589332
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||| | ||||||    
T  42589192 cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatattatgaca 42589291  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctc 146  Q
    ||| | |||||  |||| || |||  ||||||| |||||||    
T  42589292 aagtcaatcaatgctgacaaatttacatggtgtagatcctc 42589332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
Q  205 tcacaaaagtgactttaagtgggagattgtgaacatgt 242  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  42589352 tcacaaaagtgactttaagtgggagattgtgaagatgt 42589389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 26976966 - 26976720
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  26976966 cataggtgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagatgtaatgaca 26976867  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | |||    
T  26976866 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct 26976767  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26976766 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat 26976720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 27874782 - 27874539
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||    
T  27874782 cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca 27874683  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |  ||    
T  27874682 aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact 27874583  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27874582 cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca 27874539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 18967312 - 18967543
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18967312 cataggcgttaaatatcattttgttcgacaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgaca 18967411  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    || || |||||  |||| |||||| |||||||||||||||| |||||||||||| |||| |||||||  || | || |||||||||||||||||||||||    
T  18967412 aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagct 18967511  T
Q  206 cacaaaagtgactttaagtgggagattgtgaa 237  Q
    | |||||||  |||||||||||||||||||||    
T  18967512 cgcaaaagtagctttaagtgggagattgtgaa 18967543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
Q  124 aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa 222  Q
    ||||||||||||||||||||||||||||      | ||||||||||||   |||||||||||||||||||||||||| || || ||||||||| || |||    
T  21966493 aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa 21966586  T
Q  223 gtgggagattgtgaacat 240  Q
    |||||| |||||||||||    
T  21966587 gtgggatattgtgaacat 21966604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 1472531 - 1472398
Alignment:
Q  13 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 112  Q
    |||||||| ||||||||||| |||||||||||| |  | ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | |    
T  1472531 gttcaataccattttgttcgagaagtagtagagaaaaggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 1472432  T
Q  113 tcaacactgataagtttgtatggtgtcgatcctc 146  Q
    ||||  |||| || |||  |||||||||||||||    
T  1472431 tcaatgctgacaaatttacatggtgtcgatcctc 1472398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
Q  180 ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat 240  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  30968569 ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat 30968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 21965628 - 21965725
Alignment:
Q  9 aggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa 106  Q
    ||||||||||||| |||||||| | ||||||||  ||||  |||| ||||| ||||||||   ||||||||||||||| |||| ||||||||||||||    
T  21965628 aggcgttcaatattattttgtttgagaagtagtgaaggaatgaagggtggatatgcagaatgctcacaccaatgataacctagaagatgtaatgacaa 21965725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
Q  205 tcacaaaagtgactttaagtgggagattgtgaacatgt 242  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  1472378 tcacaaaagtgactttaagtgggagattgtgaagatgt 1472341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 829723 - 829958
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||||||||    
T  829723 cataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagcgtggatatgtagaagattcacactaatgataacctagcagatgtaatgaca 829822  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||    
T  829823 aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactggagttggcaaggtagagagactttgaatgct 829922  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatg 241  Q
    |||||||||  |||||||||||| ||||||||||||    
T  829923 cacaaaagtagctttaagtgggatattgtgaacatg 829958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 28715317 - 28715550
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    |||||| |||||||||||||||||||| | ||| || ||||||||| ||||| | ||||| |||||||||||||||||||| ||||||||||||||||||    
T  28715317 cataggtgttcaatatcattttgttcgagtagt-gtggaggaggga-gtgtgaatatgcataagattcacaccaatgataacctagcagatgtaatgaca 28715414  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    ||| |||||||  |||| |||||| ||| |||||||||||| |||||||||||| ||| |||||||| | ||||||| |||||||||||||||| |  ||    
T  28715415 aagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattgaaaatgtagcaacggaagttggcgaggtagagagattttgaattct 28715514  T
Q  206 cacaaaagtgactttaagtgggagattgtgaacatg 241  Q
     | ||| ||  |||||||||||||||||||||||||    
T  28715515 aaaaaatgtagctttaagtgggagattgtgaacatg 28715550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 13840995 - 13840763
Alignment:
Q  13 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 112  Q
    |||||||||||||||||||   ||||||| || || |||||| ||||  ||||||||||||| || | |||||| ||| | |||||  ||||||| ||||    
T  13840995 gttcaatatcattttgttcaa-aagtagtcgacgaaggaagtatggatgtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccga 13840897  T
Q  113 tcaacactgataagtttgtatggtgtcgatcct----cgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcac 208  Q
    ||||  || |||||||||||||| |||||||||     ||||| |||||||||||| |||||||  |||||||||||| ||||| ||||| |||||||||    
T  13840896 tcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctattggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcac 13840797  T
Q  209 aaaagtgactttaagtgggagattgtgaacatgt 242  Q
    ||||||   |||||||| |||||||| |||||||    
T  13840796 aaaagtagatttaagtgagagattgtaaacatgt 13840763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 28108 - 27877
Alignment:
Q  6 cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca 105  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  28108 cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagtagatgtgattaca 28009  T
Q  106 aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct 205  Q
    || || |||||  |||| |||||| |||||||||||||||| |||||||||||||||||||||||||  || | ||||||||| ||||||||||||||||    
T  28008 aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagct 27909  T
Q  206 cacaaaagtgactttaagtgggagattgtgaa 237  Q
    | |||||||  |||||||||||||||||||||    
T  27908 cgcaaaagtagctttaagtgggagattgtgaa 27877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 2324175 - 2323956
Alignment:
Q  18 atatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaac 117  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||  ||||||||||| ||||||||||| |||||     
T  2324175 atatcattttgttcgagaagtagtaaaggagggaagtgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaat 2324076  T
Q  118 actgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgac 217  Q
     ||   |||||| ||||||||||||| |||||||| |||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||| |    
T  2324075 gctaccaagtttatatggtgtcgatcatcgtatggactattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggc 2323976  T
Q  218 tttaagtgggagattgtgaa 237  Q
    ||||||||||||||||||||    
T  2323975 tttaagtgggagattgtgaa 2323956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 7504829 - 7504696
Alignment:
Q  13 gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga 112  Q
    |||||||| ||||||||||| ||||| |||||| | || ||||| || ||||| || ||||||||||| || ||| |||||||||| ||||||||| | |    
T  7504829 gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa 7504730  T
Q  113 tcaacactgataagtttgtatggtgtcgatcctc 146  Q
    |||| ||||| || |||  |||||||||||||||    
T  7504729 tcaatactgacaaatttacatggtgtcgatcctc 7504696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 22510198 - 22510398
Alignment:
Q  43 gaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcga 141  Q
    |||||||||  |||||| |||| ||||||||| ||  ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| |    
T  22510198 gaggagggacatgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaa 22510297  T
Q  142 tcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg 241  Q
    |||   | |||||||||  |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| |  |||||| |  ||||| |||||||||    
T  22510298 tccctctgtggcctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatg 22510395  T
Q  242 tgt 244  Q
    |||    
T  22510396 tgt 22510398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 37957033 - 37957162
Alignment:
Q  16 caatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatca 115  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||||  |||||||||  || |||  |||||||  ||| ||||||||| | || |    
T  37957033 caatatcattatgtttgcgaagtagtagaggaaggaagtgtggacatgcaatagattcacaataaagattgtctagcaagtgtgatgacaaagtcaatta 37957132  T
Q  116 acactgataagtttgtatggtgtcgatcct 145  Q
    |   |||||||||| |||| ||||||||||    
T  37957133 atggtgataagtttatatgatgtcgatcct 37957162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
Q  205 tcacaaaagtgactttaagtgggagattgtgaacatgt 242  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  7504676 tcacaaaagtaactttaagtgggagattgtgaagatgt 7504639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 34973726 - 34973826
Alignment:
Q  7 ataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa 106  Q
    |||||| || ||||||||||| || | |||||||| || ||| |||||||||| |||| |||||||||||| |||||||| |||  |||||| | |||||    
T  34973726 ataggcatttaatatcattttatttgagaagtagtggaagagagaagtgtggatatgctgaagattcacactaatgataacctaaaagatgtgacgacaa 34973825  T
Q  107 a 107  Q
    |    
T  34973826 a 34973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
Q  138 tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa 237  Q
    ||||| ||||| ||| ||||| ||||| |||||||  || | ||||||| ||||| |||||| |||||| |||||||   ||||| ||| ||||||||||    
T  41413523 tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa 41413424  T
Q  238 ca 239  Q
    ||    
T  41413423 ca 41413422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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