View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_low_1 (Length: 569)
Name: NF4565_low_1
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 40 - 553
Target Start/End: Original strand, 52713095 - 52713608
Alignment:
| Q |
40 |
atgataccctgaaactatacctgagaaacatgttataggaattaaggaaaatgctagaatatttacagggtgtaattttcgacatataggaagcattaaa |
139 |
Q |
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| T |
52713095 |
atgataccctgaaactatacctgagaaacatgttataggaattaaggaaaatgctagaatatttacagggtgtaattttagacatataggaagcattaaa |
52713194 |
T |
|
| Q |
140 |
tttaacagtgtagacaatttttgaaattttcaaagctaaaactatatatgaatttaaataggggtgaccacatgaaaatatattgaaatagattgtttaa |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713195 |
tttaacagtgtagacaatttttgaaattttcaaagctaaaactatatatgaatttaaataggggtgaccacatgaaaatatattgaaatagattgtttaa |
52713294 |
T |
|
| Q |
240 |
aacttggattcctcaccataggaaatttgacgcattcatgctgtcggcacattcatgactgttggatcaaggctgatcaataannnnnnnnaggaatgct |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52713295 |
aacttggattcctcaccataggaaatttgacgcattcatgctgtcggcacattcatgactgttggatcaaggctgatcaatatttttttttaggaatgct |
52713394 |
T |
|
| Q |
340 |
acataacgagctcactagttatcatatgatgtatcgaggcacattcattaccgttggtatgaggcagaataatccagattgcaatgtagaatttgatttt |
439 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52713395 |
acataacgagctcaccagttatcatatgatgtatcgaggcacattcattaccgttggtatgaggcagaataatccagatttcaatgtagaatttgatttt |
52713494 |
T |
|
| Q |
440 |
aaatnnnnnnntatcgaactagaaatttaaatcgtcgatcttgatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagat |
539 |
Q |
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| T |
52713495 |
aaataaaaaaatatcgaactagaaatttaaatcgtcgatcttgattaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagat |
52713594 |
T |
|
| Q |
540 |
gatctagttttcat |
553 |
Q |
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|||||||||||||| |
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| T |
52713595 |
gatctagttttcat |
52713608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 52721967 - 52722116
Alignment:
| Q |
130 |
aagcattaaatttaacagtgtagacaatttttgaaattttcaaagctaaaactata--tatgaatttaaataggggtgaccacatgaaaatatattgaaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52721967 |
aagcattaaatttaacagtgtagacaatttttgaaacttccaaagctaaaactatacatatgaatttaaataggggtgaccgcatgaaaatatattgaaa |
52722066 |
T |
|
| Q |
228 |
tagattgtttaaaacttggattcctcaccataggaaatttgacgcattca |
277 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52722067 |
taaattgtttaaaacttggattcctcaccataggaaatttgatgcattca |
52722116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 52721760 - 52721836
Alignment:
| Q |
57 |
tacctgagaaacat-gttataggaattaaggaaaatgctagaatatttacagggtgtaattttcgacatataggaag |
132 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
52721760 |
tacctgagaaacatagttataggaattaaggaaaatgctagaatatttgcagggtgtaatattaaacatataggaag |
52721836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 482 - 553
Target Start/End: Original strand, 52722224 - 52722295
Alignment:
| Q |
482 |
gatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcat |
553 |
Q |
| |
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||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
52722224 |
gatcaaatgaccttaaatgtactgatcgtatgaatgtgtgaaattgttgtgcttagatggtctaattttcat |
52722295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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