View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_low_13 (Length: 248)
Name: NF4565_low_13
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49541857 - 49542063
Alignment:
| Q |
1 |
cagatcgatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49541857 |
cagatcgatgtcgttgatgggaccaaacgcacccaaaa-ttacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaact |
49541955 |
T |
|
| Q |
101 |
ttttatttcaccaaaggcatatcagagtttgtcaactctgcacgaagatctcctatggcgtcattattaattgaaaagtgaaagaaacatttgattacta |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49541956 |
ttttatttcaccaaaggcatatcacagtttgtcaactctgcacgaagatctcctatggcgtcattattatttgaaaagtgaaagaaacatttgattacta |
49542055 |
T |
|
| Q |
201 |
agtcctaa |
208 |
Q |
| |
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|||||||| |
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| T |
49542056 |
agtcctaa |
49542063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 40917317 - 40917482
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
40917317 |
gatgtcgttgatgggaccaaacacacccaaaaattatctcctcctaaatactggagctctacatatgatatagatattagaaagtcggaaaactttttat |
40917416 |
T |
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| Q |
107 |
ttc--------------accaaaggcatatcagagtttgtcaactctgcacgaagatctcctatgg |
158 |
Q |
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||| |||||||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
40917417 |
ttccatagaagcgtttaaccaaaggcacatcacactttgtcaactctgcacgaagatctcctatgg |
40917482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 2884024 - 2883859
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
106 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
2884024 |
gatgtcgttgatgggaccaaacaaacccaaaaattatctcctcctaaatactggagttgtacatatgacatagatattaggaagttggaaaactttttat |
2883925 |
T |
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| Q |
107 |
ttc--------------accaaaggcatatcagagtttgtcaactctgcacgaagatctcctatgg |
158 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2883924 |
ttccatagaaacgtttaaccaaaggcatatcacagtttgtcaactctgcacgaagatctcctatgg |
2883859 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 3150542 - 3150707
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
3150542 |
gatgtcgttgatgggaccaaacaaacccaaaaattatttcctcctaaatactggagttgtacatatgacatagatattaggaagttggaaaactttttat |
3150641 |
T |
|
| Q |
107 |
ttc--------------accaaaggcatatcagagtttgtcaactctgcacgaagatctcctatgg |
158 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3150642 |
ttccatagaaacgtttaaccaaaggcatatcacagtttgtcaactctgcacgaagatctcctatgg |
3150707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 29251525 - 29251423
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
106 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
29251525 |
gatgtagttgatgggaccaagcgcacccaaaaattacctcctcctaaatattggagttgtacatatgacatagatactagaaagtcggaaaactttttat |
29251426 |
T |
|
| Q |
107 |
ttc |
109 |
Q |
| |
|
||| |
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|
| T |
29251425 |
ttc |
29251423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 29251407 - 29251360
Alignment:
| Q |
111 |
ccaaaggcatatcagagtttgtcaactctgcacgaagatctcctatgg |
158 |
Q |
| |
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||||||||| |||| | |||||||||||||||||||||||||| |||| |
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| T |
29251407 |
ccaaaggcagatcacactttgtcaactctgcacgaagatctccgatgg |
29251360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 29254763 - 29254665
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaacttttta |
105 |
Q |
| |
|
||||| |||||||| | |||||| || ||||||||| | |||||| |||| ||||||||||| || ||||||| ||||| |||||||| ||||||| |
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| T |
29254763 |
gatgttgttgatggcatcaaacgtacacaaaaattatcatctcctatatacaagagttgtacatctggtatagatgctagaatgttggaaagcttttta |
29254665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 1086928 - 1086830
Alignment:
| Q |
7 |
gatgtcgttgatgggaccaaacgcacccaaaaattacctcctcctaaatactggagttgtacatatgatatagatattagaaagttggaaaactttttat |
106 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| | |||| |||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
1086928 |
gatgtcgttaatgggaccaaacacacccaaaa-tcaccttctcctaaatactcgagttgtacatgtggtatagatactagaaagttggaaaactttttat |
1086830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 1086812 - 1086769
Alignment:
| Q |
110 |
accaaaggcatatcagagtttgtcaactctgcacgaagatctcc |
153 |
Q |
| |
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|||||||||| |||| | |||||||||||||||||||||||||| |
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| T |
1086812 |
accaaaggcagatcacactttgtcaactctgcacgaagatctcc |
1086769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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