View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4565_low_17 (Length: 220)
Name: NF4565_low_17
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 42796158 - 42795987
Alignment:
| Q |
30 |
ccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttttataccaatattgtgagttttcagtgatacgaaggactcaaaaggaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42796158 |
ccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttttataccaatattgtgagttt-cagtgatactaaggactcaaaaggaac |
42796060 |
T |
|
| Q |
130 |
aaggagatctgaagagaaaggagtgaagaaaaagaaacctgaaattccagcagtgcagtaaacaaggacaaag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42796059 |
aaggagatctgaagagaaaggagtgaagaaaaagaaacctgaaattccagcagtgcagtaaacaaggacaaag |
42795987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 41452785 - 41452828
Alignment:
| Q |
28 |
gtccgtaagccctaactcaactgacaataccgatattgttaggt |
71 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
41452785 |
gtccgtaagacctaactcaactgacaatagcgagattgttaggt |
41452828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 9559180 - 9559127
Alignment:
| Q |
28 |
gtccgtaagccctaactcaactgacaataccgatattgttaggtcggacacttt |
81 |
Q |
| |
|
||||||||| |||| ||||| ||||||||| ||||||||||||| | ||||||| |
|
|
| T |
9559180 |
gtccgtaaggcctagctcaattgacaatactgatattgttaggttgaacacttt |
9559127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3408 times since January 2019
Visitors: 8687