View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4565_low_3 (Length: 363)

Name: NF4565_low_3
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4565_low_3
NF4565_low_3
[»] chr4 (14 HSPs)
chr4 (1-318)||(7606070-7606387)
chr4 (1-346)||(7636870-7637218)
chr4 (1-341)||(7615061-7615401)
chr4 (171-344)||(7628496-7628669)
chr4 (28-284)||(7656132-7656388)
chr4 (1-96)||(7633443-7633541)
chr4 (1-65)||(7628708-7628772)
chr4 (109-173)||(39087996-39088060)
chr4 (217-293)||(39097547-39097623)
chr4 (108-164)||(39097682-39097738)
chr4 (112-179)||(39070932-39070999)
chr4 (109-171)||(39091389-39091451)
chr4 (219-284)||(39075095-39075160)
chr4 (109-179)||(39082336-39082406)
[»] chr7 (5 HSPs)
chr7 (34-287)||(8941738-8941990)
chr7 (1-344)||(8936069-8936403)
chr7 (1-346)||(8913561-8913902)
chr7 (1-96)||(8919086-8919184)
chr7 (1-40)||(8938845-8938884)
[»] chr3 (2 HSPs)
chr3 (121-308)||(40147453-40147640)
chr3 (121-284)||(8102323-8102486)
[»] chr6 (2 HSPs)
chr6 (112-316)||(6500335-6500539)
chr6 (218-272)||(11968807-11968861)
[»] scaffold0190 (2 HSPs)
scaffold0190 (113-179)||(4435-4501)
scaffold0190 (218-316)||(4292-4390)
[»] chr8 (3 HSPs)
chr8 (108-173)||(15745016-15745081)
chr8 (208-288)||(15196335-15196415)
chr8 (220-282)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 7606387 - 7606070
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606387 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 7606288  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||| || ||| ||||    
T  7606287 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt 7606188  T
Q  201 taatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggat 300  Q
     |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||| |||||| || ||  |||||    
T  7606187 aaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggat 7606088  T
Q  301 gttgtgtccaactaatgc 318  Q
    || ||| |||||||||||    
T  7606087 gtcgtgaccaactaatgc 7606070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 7637218 - 7636870
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt 97  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||    ||||   || |||||||    
T  7637218 attgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatt 7637119  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggact 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| || |||||    
T  7637118 tcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggact 7637019  T
Q  198 tgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaattt-gt 296  Q
    | |||  |||||||| |||||||||||||||||||| ||||||||| | |||||||||   ||||||||||||| ||||||||||||||| ||||||  |    
T  7637018 tattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc-caatttcat 7636920  T
Q  297 ggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgat 346  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7636919 ggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgat 7636870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 7615401 - 7615061
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  | ||| |||| | || ||||||||||    
T  7615401 attgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacatggcaaaaaataatttca 7615302  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||   || |||||| |    
T  7615301 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttat 7615202  T
Q  201 taatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggat 300  Q
    ||  || |||||||||||||||||||||||||| || |||||| | |||||| |  | |||||||||||||||||||||||||||||||||||  |||||    
T  7615201 tacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggat 7615102  T
Q  301 gttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaat 341  Q
    |||| |||||||||||||||| ||| |||||||||||||||    
T  7615101 gttgcgtccaactaatgcaacatgatgtgtgtaaaatcaat 7615061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 171 - 344
Target Start/End: Complemental strand, 7628669 - 7628496
Alignment:
Q  171 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 7628570  T
Q  271 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttg 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628569 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttg 7628496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 7656132 - 7656388
Alignment:
Q  28 aagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttg 127  Q
    |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| ||  || ||| |||||  |  ||||||| |||||||||  |||||    
T  7656132 aagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagtttg 7656231  T
Q  128 atgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaagg 227  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||  || ||| | |||  ||  |||||||||||||||||||     
T  7656232 atgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaagc 7656331  T
Q  228 tagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 284  Q
    ||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  7656332 tagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatga 7656388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7633541 - 7633443
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| |||||||||||||||||||||   ||||||||| ||||||||||||||||||||||| |||||||||||    
T  7633541 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagcatgaccaataataat 7633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7628772 - 7628708
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt 65  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  7628772 attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt 7628708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 39088060 - 39087996
Alignment:
Q  109 agtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 173  Q
    |||||||||||| ||||||||||||||| ||||||||| || ||||| |||||||| | ||||||    
T  39088060 agtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcg 39087996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 39097623 - 39097547
Alignment:
Q  217 atagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatt 293  Q
    ||||||||||||||||||||  || || | || ||| |||| || ||||||||||| ||||||||||||||||||||    
T  39097623 atagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccctcaatt 39097547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 39097738 - 39097682
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgt 164  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||| ||||||||    
T  39097738 tagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgt 39097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 39070999 - 39070932
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    ||||||||  |||||||||||| ||| |||||||| || ||||||||||| ||||||||||| |||||    
T  39070999 agttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg 39070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 39091451 - 39091389
Alignment:
Q  109 agtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggtt 171  Q
    |||||||||||  ||||||||||||| ||||||||||| || ||||| |||||||||| ||||    
T  39091451 agtagttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggtt 39091389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 39075160 - 39075095
Alignment:
Q  219 agaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 284  Q
    ||||||||||||| ||||  ||||| | ||||||||||| || ||||||||||| |||||||||||    
T  39075160 agaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga 39075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 39082406 - 39082336
Alignment:
Q  109 agtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    ||||||||||   ||||||||||||||||||||||||| || ||||| ||||| || | |||||| |||||    
T  39082406 agtagttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgg 39082336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 287
Target Start/End: Original strand, 8941738 - 8941990
Alignment:
Q  34 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8941738 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt 8941837  T
Q  134 atggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtat 233  Q
    ||||||||||||||||||||||||| ||| | || | |||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||    
T  8941838 atggtaatgatttcggatggggaaaacctatagcag-tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat 8941936  T
Q  234 tgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccc 287  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||| ||||||    
T  8941937 tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgaccc 8941990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 8936069 - 8936403
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||      || |||| | || || |||||||    
T  8936069 attgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacatgccaaaaaagaatttca 8936159  T
Q  101 tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgt 200  Q
    || ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | |||| |||||||||||   || |||||| |    
T  8936160 tagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttat 8936259  T
Q  201 taatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggat 300  Q
    ||  |||||||| |||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||||  |||||    
T  8936260 tacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggat 8936359  T
Q  301 gttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttg 344  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||    
T  8936360 gttgcgtccaactaatgcaacatgatgtgtgtaaaatcaatttg 8936403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 8913561 - 8913902
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt 97  Q
    |||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||    ||||   || | |||||    
T  8913561 attgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaacatggtaaaaactaatt 8913660  T
Q  98 tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggact 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||| || |||||    
T  8913661 tcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggatataaaataaatggact 8913753  T
Q  198 tgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaattt-gt 296  Q
    | |||  |||||||  |||||||||||||||| ||| ||||||||| | |||||||||   ||||||||||||| ||||||||||||||| ||||||  |    
T  8913754 tattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc-caatttcat 8913852  T
Q  297 ggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgat 346  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  8913853 ggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgat 8913902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8919086 - 8919184
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagcatgtccaataataat 96  Q
    ||||||||||||||  |||||||| |||| ||||||||||||||||||||   ||||||||||  |||||||||||||||||||||| |||||||||||    
T  8919086 attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagcatgaccaataataat 8919184  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8938845 - 8938884
Alignment:
Q  1 attgcttcacacacggatgagaagttgaagaatcactatg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8938845 attgcttcacacacggatgagaagttgaagaatcactatg 8938884  T

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Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 121 - 308
Target Start/End: Original strand, 40147453 - 40147640
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatag 220  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||| ||||||| |  ||| |  ||| |||||||||||||| ||    
T  40147453 tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag 40147552  T
Q  221 aagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtc 308  Q
    |||||||||| || ||| ||||| | ||||||||| || ||||||||||||||||||||||||||| | | ||  |||||||||||||    
T  40147553 aagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc 40147640  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 121 - 284
Target Start/End: Complemental strand, 8102486 - 8102323
Alignment:
Q  121 tggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatag 220  Q
    ||||||||||||||||| ||| |||| ||||||||||| || ||||| ||||| |||||| |||||   |  |||||  ||  |||||||||||||||||    
T  8102486 tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag 8102387  T
Q  221 aagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 284  Q
    ||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||||||||    
T  8102386 aagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 6500539 - 6500335
Alignment:
Q  112 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttg 211  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| || || |||||  |||| |||| | |||||||  | ||  | |||| ||||||||    
T  6500539 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg 6500440  T
Q  212 ctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaa 311  Q
    |||||| |||| |||||||||| ||||||||| | |||||||||||| ||| |||||| |||||| |  |||||||| | ||  |||||| |||||||||    
T  6500439 ctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaa 6500340  T
Q  312 ctaat 316  Q
    |||||    
T  6500339 ctaat 6500335  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
Q  218 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggc 272  Q
    |||||||||||||||| ||| || || | |||||||||||| |||||||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc 11968807  T

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Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 4501 - 4435
Alignment:
Q  113 gttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 179  Q
    ||||||| |||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 4435  T

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Target: scaffold0190; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 4390 - 4292
Alignment:
Q  218 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaat 316  Q
    ||||||| ||||| || |||||| || | ||||||||||  || ||||||||||||||  ||||||| ||| | ||| |||||||||||||| ||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtcctactaat 4292  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 15745016 - 15745081
Alignment:
Q  108 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 173  Q
    ||||||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| ||||||    
T  15745016 tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcg 15745081  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 15196335 - 15196415
Alignment:
Q  208 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccct 288  Q
    |||||||| | ||||||||| ||||| ||| || || | |||||||| ||| ||||||||||||  |||||||||||||||    
T  15196335 tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccct 15196415  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 34174053 - 34173991
Alignment:
Q  220 gaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 282  Q
    |||||||||||||||||  ||||| | ||||||||||| || ||||||||||| || ||||||    
T  34174053 gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggaggctattggaaat 34173991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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