View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4565_low_4 (Length: 318)
Name: NF4565_low_4
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4565_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 306
Target Start/End: Original strand, 39562099 - 39562384
Alignment:
| Q |
21 |
cttgttagtctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttg |
120 |
Q |
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| T |
39562099 |
cttgttagtctgatatggtattggtttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttg |
39562198 |
T |
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| Q |
121 |
tactgactaaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtga |
220 |
Q |
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| T |
39562199 |
tactgactaaagttcttgaatgctggcctcaattggcagccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtga |
39562298 |
T |
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| Q |
221 |
taatgtacattaactattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgct |
306 |
Q |
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| T |
39562299 |
taatgtacattaattattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgct |
39562384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 39572290 - 39572532
Alignment:
| Q |
22 |
ttgttagtctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgt |
121 |
Q |
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| T |
39572290 |
ttgttagtctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactgggacaccaaaagtaatattagaataaccaaggtttttgt |
39572389 |
T |
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| Q |
122 |
actgactaaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgat |
221 |
Q |
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| T |
39572390 |
actaactaaaacccttgaatgctggcttccacta-ca-ccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgat |
39572487 |
T |
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| Q |
222 |
aatgtacattaactattattagaaaacattgcaaaattttcctac |
266 |
Q |
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| T |
39572488 |
aatgtacattaattattattagaaaacattgcaaaattttcctac |
39572532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 39566778 - 39567060
Alignment:
| Q |
21 |
cttgttagtctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttg |
120 |
Q |
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||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566778 |
cttgttattctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttg |
39566877 |
T |
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| Q |
121 |
tactgactaaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcac-tagttgtg |
219 |
Q |
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| T |
39566878 |
tactgactaaaattcttgaatgctggtatcaattgacagccatcaataaagctagaa-cctcagttggcatttttatctgattaaactcacttagttgta |
39566976 |
T |
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| Q |
220 |
ataatgtacattaactattattagaaaacat-tgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgc |
305 |
Q |
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| T |
39566977 |
ataatgtacatt-attat--tttgaaaacatgtacggaattttcctaccactcattaagcttacaaatatatagtctgtgtctctgc |
39567060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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