View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4565_low_8 (Length: 281)
Name: NF4565_low_8
Description: NF4565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4565_low_8 |
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[»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 41722654 - 41722903
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41722654 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
41722753 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41722754 |
aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
41722853 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataag |
255 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41722854 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacataag |
41722903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 34359437 - 34359667
Alignment:
Q |
10 |
ggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagc |
109 |
Q |
|
|
||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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|
T |
34359437 |
ggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagc |
34359536 |
T |
|
Q |
110 |
cgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcaca |
209 |
Q |
|
|
|||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| |
|
|
T |
34359537 |
cgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcaca |
34359636 |
T |
|
Q |
210 |
aaagtgactttaagtgggagattgtgaacat |
240 |
Q |
|
|
||||||||||||||||||||||||||||||| |
|
|
T |
34359637 |
aaagtgactttaagtgggagattgtgaacat |
34359667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 48697894 - 48697661
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
48697894 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
48697795 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||| |
|
|
T |
48697794 |
aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagct |
48697695 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaaca |
239 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |
|
|
T |
48697694 |
cacaaaagtgactttaagtgggagattgtgaaca |
48697661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 30946256 - 30946023
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
30946256 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
30946157 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| |||| |
|
|
T |
30946156 |
aagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagct |
30946057 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaaca |
239 |
Q |
|
|
||||||||||||||||||||||||| |||||||| |
|
|
T |
30946056 |
cacaaaagtgactttaagtgggagactgtgaaca |
30946023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 42270147 - 42270390
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
T |
42270147 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca |
42270246 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| | || |
|
|
T |
42270247 |
aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact |
42270346 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42270347 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
42270390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 2003134 - 2003267
Alignment:
Q |
13 |
gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga |
112 |
Q |
|
|
|||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | | |
|
|
T |
2003134 |
gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa |
2003233 |
T |
|
Q |
113 |
tcaacactgataagtttgtatggtgtcgatcctc |
146 |
Q |
|
|
|||| ||| || ||| ||||||||||||||| |
|
|
T |
2003234 |
tcaatgttgacaaatttacatggtgtcgatcctc |
2003267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 9440164 - 9439921
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
T |
9440164 |
cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca |
9440065 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |
|
|
T |
9440064 |
aagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagactttgaatact |
9439965 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
9439964 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
9439921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 24594564 - 24594424
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||||| |||||| |
|
|
T |
24594564 |
cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgaca |
24594465 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctc |
146 |
Q |
|
|
||| | ||||| |||| || ||| ||||||| ||||||| |
|
|
T |
24594464 |
aagtcaatcaatgctgacaaatttacatggtgtagatcctc |
24594424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
Q |
205 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
242 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||| |
|
|
T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
24594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 54545389 - 54545632
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
T |
54545389 |
cataggcgttcaatatcattttattcgagaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgtaatgaca |
54545488 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| | ||| |
|
|
T |
54545489 |
aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgct |
54545588 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
54545589 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
54545632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5819348 - 5819102
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||| |||||||||| |
|
|
T |
5819348 |
cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagttgtaatgaca |
5819249 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | ||| |
|
|
T |
5819248 |
aagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct |
5819149 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
252 |
Q |
|
|
||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
5819148 |
cacaaaagtaactttaagtgggagattgtgaacatgtgtgaacacat |
5819102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 42589192 - 42589332
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||| |||||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| || ||| |||||||| | |||||| |
|
|
T |
42589192 |
cataggtgttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatattatgaca |
42589291 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctc |
146 |
Q |
|
|
||| | ||||| |||| || ||| ||||||| ||||||| |
|
|
T |
42589292 |
aagtcaatcaatgctgacaaatttacatggtgtagatcctc |
42589332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
Q |
205 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
242 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||| |
|
|
T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
42589389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 26976966 - 26976720
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
T |
26976966 |
cataggtgttcaatatcattttgttcgagaagtagtggaggagggaagcgtggatatgcaaaagattcacactaatgataacctagcagatgtaatgaca |
26976867 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||| | ||| |
|
|
T |
26976866 |
aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgct |
26976767 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
252 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
26976766 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
26976720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 27874782 - 27874539
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
T |
27874782 |
cataggcattcaatatcattttgttcgcgaagtagtagaggaaggaagcgtggatatgcagaagattcacactaatgataacctagcagatgcaatgaca |
27874683 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |||| | || |
|
|
T |
27874682 |
aagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcctattggaaacgtagcaactagagttggcaaggtagagagactttgaatact |
27874583 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
249 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
27874582 |
cacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
27874539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 18967312 - 18967543
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
18967312 |
cataggcgttaaatatcattttgttcgacaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgaca |
18967411 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
|| || ||||| |||| |||||| |||||||||||||||| |||||||||||| |||| ||||||| || | || ||||||||||||||||||||||| |
|
|
T |
18967412 |
aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagct |
18967511 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaa |
237 |
Q |
|
|
| ||||||| ||||||||||||||||||||| |
|
|
T |
18967512 |
cgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
Q |
124 |
aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa |
222 |
Q |
|
|
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| || || ||||||||| || ||| |
|
|
T |
21966493 |
aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa |
21966586 |
T |
|
Q |
223 |
gtgggagattgtgaacat |
240 |
Q |
|
|
|||||| ||||||||||| |
|
|
T |
21966587 |
gtgggatattgtgaacat |
21966604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 1472531 - 1472398
Alignment:
Q |
13 |
gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga |
112 |
Q |
|
|
|||||||| ||||||||||| |||||||||||| | | ||||| || |||||||| ||||||||||| || ||| |||||||||| ||||||||| | | |
|
|
T |
1472531 |
gttcaataccattttgttcgagaagtagtagagaaaaggagtgttgatatgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa |
1472432 |
T |
|
Q |
113 |
tcaacactgataagtttgtatggtgtcgatcctc |
146 |
Q |
|
|
|||| |||| || ||| ||||||||||||||| |
|
|
T |
1472431 |
tcaatgctgacaaatttacatggtgtcgatcctc |
1472398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
Q |
180 |
ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat |
240 |
Q |
|
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
30968569 |
ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat |
30968629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 21965628 - 21965725
Alignment:
Q |
9 |
aggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa |
106 |
Q |
|
|
||||||||||||| |||||||| | |||||||| |||| |||| ||||| |||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
T |
21965628 |
aggcgttcaatattattttgtttgagaagtagtgaaggaatgaagggtggatatgcagaatgctcacaccaatgataacctagaagatgtaatgacaa |
21965725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
Q |
205 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
242 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||| |
|
|
T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
1472341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 829723 - 829958
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
T |
829723 |
cataggcgttcaatatcattttgttcgagaagtagtagaggaaggaagcgtggatatgtagaagattcacactaatgataacctagcagatgtaatgaca |
829822 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||| |
|
|
T |
829823 |
aagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcctattggaaacatagcaactggagttggcaaggtagagagactttgaatgct |
829922 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatg |
241 |
Q |
|
|
||||||||| |||||||||||| |||||||||||| |
|
|
T |
829923 |
cacaaaagtagctttaagtgggatattgtgaacatg |
829958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 28715317 - 28715550
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
|||||| |||||||||||||||||||| | ||| || ||||||||| ||||| | ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
T |
28715317 |
cataggtgttcaatatcattttgttcgagtagt-gtggaggaggga-gtgtgaatatgcataagattcacaccaatgataacctagcagatgtaatgaca |
28715414 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
||| ||||||| |||| |||||| ||| |||||||||||| |||||||||||| ||| |||||||| | ||||||| |||||||||||||||| | || |
|
|
T |
28715415 |
aagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattgaaaatgtagcaacggaagttggcgaggtagagagattttgaattct |
28715514 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaacatg |
241 |
Q |
|
|
| ||| || ||||||||||||||||||||||||| |
|
|
T |
28715515 |
aaaaaatgtagctttaagtgggagattgtgaacatg |
28715550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 13840995 - 13840763
Alignment:
Q |
13 |
gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga |
112 |
Q |
|
|
||||||||||||||||||| ||||||| || || |||||| |||| ||||||||||||| || | |||||| ||| | ||||| ||||||| |||| |
|
|
T |
13840995 |
gttcaatatcattttgttcaa-aagtagtcgacgaaggaagtatggatgtgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccga |
13840897 |
T |
|
Q |
113 |
tcaacactgataagtttgtatggtgtcgatcct----cgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcac |
208 |
Q |
|
|
|||| || |||||||||||||| ||||||||| ||||| |||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||| |
|
|
T |
13840896 |
tcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctattggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcac |
13840797 |
T |
|
Q |
209 |
aaaagtgactttaagtgggagattgtgaacatgt |
242 |
Q |
|
|
|||||| |||||||| |||||||| ||||||| |
|
|
T |
13840796 |
aaaagtagatttaagtgagagattgtaaacatgt |
13840763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 28108 - 27877
Alignment:
Q |
6 |
cataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgaca |
105 |
Q |
|
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |
|
|
T |
28108 |
cataggcgttcaatatcattttgttcgagaagtagtggaggagggaagtgtggacatgcagaagattcacaccaatgataatctagtagatgtgattaca |
28009 |
T |
|
Q |
106 |
aagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagct |
205 |
Q |
|
|
|| || ||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||| || | ||||||||| |||||||||||||||| |
|
|
T |
28008 |
aaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggcctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagct |
27909 |
T |
|
Q |
206 |
cacaaaagtgactttaagtgggagattgtgaa |
237 |
Q |
|
|
| ||||||| ||||||||||||||||||||| |
|
|
T |
27908 |
cgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 2324175 - 2323956
Alignment:
Q |
18 |
atatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaac |
117 |
Q |
|
|
||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
T |
2324175 |
atatcattttgttcgagaagtagtaaaggagggaagtgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaat |
2324076 |
T |
|
Q |
118 |
actgataagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgac |
217 |
Q |
|
|
|| |||||| ||||||||||||| |||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| | |
|
|
T |
2324075 |
gctaccaagtttatatggtgtcgatcatcgtatggactattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggc |
2323976 |
T |
|
Q |
218 |
tttaagtgggagattgtgaa |
237 |
Q |
|
|
|||||||||||||||||||| |
|
|
T |
2323975 |
tttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 7504829 - 7504696
Alignment:
Q |
13 |
gttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga |
112 |
Q |
|
|
|||||||| ||||||||||| ||||| |||||| | || ||||| || ||||| || ||||||||||| || ||| |||||||||| ||||||||| | | |
|
|
T |
7504829 |
gttcaataccattttgttcgagaagtggtagagaaagggagtgttgatatgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaa |
7504730 |
T |
|
Q |
113 |
tcaacactgataagtttgtatggtgtcgatcctc |
146 |
Q |
|
|
|||| ||||| || ||| ||||||||||||||| |
|
|
T |
7504729 |
tcaatactgacaaatttacatggtgtcgatcctc |
7504696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 22510198 - 22510398
Alignment:
Q |
43 |
gaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcga |
141 |
Q |
|
|
||||||||| |||||| |||| ||||||||| || ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| | |
|
|
T |
22510198 |
gaggagggacatgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaa |
22510297 |
T |
|
Q |
142 |
tcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg |
241 |
Q |
|
|
||| | ||||||||| |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| | |||||| | ||||| ||||||||| |
|
|
T |
22510298 |
tccctctgtggcctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatg |
22510395 |
T |
|
Q |
242 |
tgt |
244 |
Q |
|
|
||| |
|
|
T |
22510396 |
tgt |
22510398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 37957033 - 37957162
Alignment:
Q |
16 |
caatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatca |
115 |
Q |
|
|
|||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||| ||||||| ||| ||||||||| | || | |
|
|
T |
37957033 |
caatatcattatgtttgcgaagtagtagaggaaggaagtgtggacatgcaatagattcacaataaagattgtctagcaagtgtgatgacaaagtcaatta |
37957132 |
T |
|
Q |
116 |
acactgataagtttgtatggtgtcgatcct |
145 |
Q |
|
|
| |||||||||| |||| |||||||||| |
|
|
T |
37957133 |
atggtgataagtttatatgatgtcgatcct |
37957162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
Q |
205 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
242 |
Q |
|
|
|||||||||| |||||||||||||||||||||| |||| |
|
|
T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaagatgt |
7504639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 34973726 - 34973826
Alignment:
Q |
7 |
ataggcgttcaatatcattttgttcgcgaagtagtagaggagggaagtgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaa |
106 |
Q |
|
|
|||||| || ||||||||||| || | |||||||| || ||| |||||||||| |||| |||||||||||| |||||||| ||| |||||| | ||||| |
|
|
T |
34973726 |
ataggcatttaatatcattttatttgagaagtagtggaagagagaagtgtggatatgctgaagattcacactaatgataacctaaaagatgtgacgacaa |
34973825 |
T |
|
Q |
107 |
a |
107 |
Q |
|
|
| |
|
|
T |
34973826 |
a |
34973826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
Q |
138 |
tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
237 |
Q |
|
|
||||| ||||| ||| ||||| ||||| ||||||| || | ||||||| ||||| |||||| |||||| ||||||| ||||| ||| |||||||||| |
|
|
T |
41413523 |
tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa |
41413424 |
T |
|
Q |
238 |
ca |
239 |
Q |
|
|
|| |
|
|
T |
41413423 |
ca |
41413422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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