View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4566-Insertion-1 (Length: 267)

Name: NF4566-Insertion-1
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4566-Insertion-1
NF4566-Insertion-1
[»] chr8 (3 HSPs)
chr8 (81-255)||(43441154-43441328)
chr8 (8-252)||(43743694-43743938)
chr8 (9-85)||(43445730-43445806)
[»] chr7 (5 HSPs)
chr7 (15-139)||(3146258-3146382)
chr7 (8-207)||(8645802-8646002)
chr7 (9-150)||(8640745-8640887)
chr7 (52-138)||(8586796-8586885)
chr7 (68-132)||(8615710-8615777)
[»] chr2 (3 HSPs)
chr2 (37-238)||(43624346-43624548)
chr2 (79-139)||(12234104-12234164)
chr2 (97-139)||(16663133-16663175)
[»] chr5 (1 HSPs)
chr5 (37-177)||(28218871-28219011)
[»] chr6 (2 HSPs)
chr6 (15-135)||(28910369-28910492)
chr6 (8-150)||(12488702-12488843)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 43441328 - 43441154
Alignment:
Q  81 aggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagtgtattcgaacacattataagaaagtttgtctagatttttat 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43441328 aggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagtgtattcgaacacattataagaaagtttgtctagatttttat 43441229  T
Q  181 tctctcaattggtttttaaattgttgcagctgaaactatgacttacatgcttctttttcatattaagtttagaag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43441228 tctctcaattggtttttaaattgttgcagctgaaactatgacttacatgcttctttttcatattaagtttagaag 43441154  T

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Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 43743938 - 43743694
Alignment:
Q  8 gttaaattaaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatg 107  Q
    |||||||||||||| || ||| ||||||||||||||||||  ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||    
T  43743938 gttaaattaaagctttcttctcaagtaactgacaagatcatttctgcaattacaaagaccacaaatttgctcgacgataatcagcagagtgaaatagatg 43743839  T
Q  108 ttcttgaaaatcatctgaaggagcttgagagtgtattcgaacacattataagaaagtttgtctagatttttattctctcaattggtttttaaattgttgc 207  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  43743838 ttcttgaaaatcatctgaaggagcttgagagtgtattccaacacattataagaaagtttgtctagatttttgttctgtcaattggtttttaaattgttgc 43743739  T
Q  208 agctgaaactatgacttacatgcttc-tttttcatattaagtttag 252  Q
    |||| ||||||||||||| || |||| |||||||||||||||||||    
T  43743738 agct-aaactatgacttagatacttcttttttcatattaagtttag 43743694  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 43445806 - 43445730
Alignment:
Q  9 ttaaattaaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggat 85  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43445806 ttaaattaaagctctcgtctaaagtaactgacaagatcaactatgcaattacaaagaccacaaatttgcttgaggat 43445730  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 3146382 - 3146258
Alignment:
Q  15 taaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatgttcttga 114  Q
    |||| ||||| ||| ||| || |||||||||||| |||||||| |||||| |||||| ||| |||||   || |||||| ||||||||||||||||||||    
T  3146382 taaatctctcctctcaagaaaatgacaagatcaattctgcaatcacaaaggccacaagtttacttgatagtacccagcagagtgaaatagatgttcttga 3146283  T
Q  115 aaatcatctgaaggagcttgagagt 139  Q
    |||||| ||||||||||||||||||    
T  3146282 aaatcacctgaaggagcttgagagt 3146258  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 8646002 - 8645802
Alignment:
Q  8 gttaaattaaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatg 107  Q
    ||||||||||| ||||| ||| ||| || ||||||||||||   ||||||||| ||| |||||||| |||||||   | |  | ||||||||||| ||||    
T  8646002 gttaaattaaatctctcatctaaagaaaatgacaagatcaataatgcaattacgaaggccacaaatctgcttgacagtgataaacaaagtgaaattgatg 8645903  T
Q  108 ttcttgaaaatcatctgaaggagcttgagagtgtattcgaacacattataagaaagtttgtctagatttttattctctcaattgg-tttttaaattgttg 206  Q
    |||| ||||||||||||||||||||||| ||| ||||| |||| || ||  |||  | ||||||| ||||| || |  ||||||| ||||||||||||||    
T  8645902 ttctggaaaatcatctgaaggagcttgatagtatattccaacaaatcattggaagatatgtctagttttttgttttgacaattggttttttaaattgttg 8645803  T
Q  207 c 207  Q
    |    
T  8645802 c 8645802  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 8640745 - 8640887
Alignment:
Q  9 ttaaattaaagctctcgtctgaa-gtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatg 107  Q
    ||||| |||||||||| ||| || | || ||||||||||||   | ||||||| ||| ||||||||||||||||   | || | |||||||||||| |||    
T  8640745 ttaaactaaagctctcttctcaaagaaaatgacaagatcaatcatacaattacgaaggccacaaatttgcttgactgtgacaaacaaagtgaaatatatg 8640844  T
Q  108 ttcttgaaaatcatctgaaggagcttgagagtgtattcgaaca 150  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
T  8640845 ttctggaaaatcatctgaaggagcttgagagtatattccaaca 8640887  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 8586796 - 8586885
Alignment:
Q  52 tgcaattacaaagaccacaaatttgcttga---ggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagag 138  Q
    ||||||||||| | | ||||||||||||||   | |||||||| | | ||| |||||||||||||   ||||||||||||||||||||||    
T  8586796 tgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttgagag 8586885  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 8615777 - 8615710
Alignment:
Q  68 acaaatttgcttga---ggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagct 132  Q
    ||||||||||||||   | |||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  8615777 acaaatttgcttgataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggagct 8615710  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 43624548 - 43624346
Alignment:
Q  37 tgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgag 136  Q
    ||||||||||||   ||||||||||||| ||||||||||||||||   ||| ||| | ||| |||  |||||||| || |||||||| ||||||||||||    
T  43624548 tgacaagatcaataatgcaattacaaaggccacaaatttgcttgacactaatcaggagagtaaaacggatgttctcgagaatcatcttaaggagcttgag 43624449  T
Q  137 agtgtattcgaacacattataagaaagtttgtctagatttttattctctcaattggttttt-aaattgttgcagctgaaactatgacttacatgcttctt 235  Q
    ||| ||||| ||| ||||| | |||| |  |||||| ||||| || ||||| ||||||||| ||||| |||  | |||||| |||||||| |||||||||    
T  43624448 agtatattccaacgcattaaaggaaaatccgtctagttttttgttatctcatttggtttttcaaattcttgtcgttgaaaccatgacttagatgcttctt 43624349  T
Q  236 ttt 238  Q
    |||    
T  43624348 ttt 43624346  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 12234164 - 12234104
Alignment:
Q  79 tgaggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagt 139  Q
    |||| |||||||||||  ||||||||||||||||||  |||||||||| | ||||||||||    
T  12234164 tgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagt 12234104  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 16663133 - 16663175
Alignment:
Q  97 tgaaatagatgttcttgaaaatcatctgaaggagcttgagagt 139  Q
    |||| |||||||||||||  |||||||||||||||||||||||    
T  16663133 tgaagtagatgttcttgaggatcatctgaaggagcttgagagt 16663175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 28219011 - 28218871
Alignment:
Q  37 tgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgag 136  Q
    ||||||||||||||||| |||||| ||| | |||||||| | |||   ||||||| | ||||||||| ||||||||||||||||||||||||||||  ||    
T  28219011 tgacaagatcaactctgaaattacgaaggcaacaaatttccatgatactaaccagaagagtgaaatacatgttcttgaaaatcatctgaaggagctcaag 28218912  T
Q  137 agtgtattcgaacacattataagaaagtttgtctagatttt 177  Q
    ||| ||||  ||||||||||||| || | ||||||| ||||    
T  28218911 agtatattgcaacacattataagtaaatatgtctagttttt 28218871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 28910492 - 28910369
Alignment:
Q  15 taaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggata---accagcaaagtgaaatagatgttct 111  Q
    |||||||||| ||| ||| || ||||||||| ||||||||||||| ||||  |||||||||||||||   ||   ||||||| |||||||||||| ||||    
T  28910492 taaagctctcctctcaagaaaatgacaagattaactctgcaattaaaaaggacacaaatttgcttgaaattagtaaccagcagagtgaaatagatattct 28910393  T
Q  112 tgaaaatcatctgaaggagcttga 135  Q
    |||||||||||||||||| |||||    
T  28910392 tgaaaatcatctgaaggatcttga 28910369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 12488702 - 12488843
Alignment:
Q  8 gttaaattaaagctctcgtctgaagtaactgacaagatcaactctgcaattacaaagaccacaaatttgcttgaggataaccagcaaagtgaaatagatg 107  Q
    ||||||||||||||||| ||| ||| || ||| ||||||||   ||| ||||| ||| ||||||||||| ||||   | |  | |||||||||||| |||    
T  12488702 gttaaattaaagctctcatctaaagaaaatgataagatcaatcatgcgattacgaaggccacaaatttg-ttgatagtgaaaaacaaagtgaaatacatg 12488800  T
Q  108 ttcttgaaaatcatctgaaggagcttgagagtgtattcgaaca 150  Q
    |||| ||||||||| ||||||||||||||||| ||||| ||||    
T  12488801 ttctggaaaatcatttgaaggagcttgagagtatattccaaca 12488843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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