View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4566_high_10 (Length: 321)
Name: NF4566_high_10
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4566_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 35936856 - 35936732
Alignment:
| Q |
129 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
|
| Q |
229 |
acaaaaatcaagcattccagaataa |
253 |
Q |
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||||||||||||||||||||||||| |
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| T |
35936756 |
acaaaaatcaagcattccagaataa |
35936732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35936984 - 35936908
Alignment:
| Q |
1 |
aaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35936984 |
aaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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