View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4566_high_2 (Length: 384)
Name: NF4566_high_2
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4566_high_2 |
 | |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 16899237 - 16899610
Alignment:
| Q |
1 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggtggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
16899237 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggtagaa |
16899336 |
T |
|
| Q |
101 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16899337 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccatttattgggagtcgatgact |
16899436 |
T |
|
| Q |
201 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899437 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
16899536 |
T |
|
| Q |
301 |
cccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899537 |
cccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
16899610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 18347752 - 18348125
Alignment:
| Q |
1 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggtggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
18347752 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggtagaa |
18347851 |
T |
|
| Q |
101 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347852 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgact |
18347951 |
T |
|
| Q |
201 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347952 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
18348051 |
T |
|
| Q |
301 |
cccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348052 |
cccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttccctatg |
18348125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 13236739 - 13236366
Alignment:
| Q |
1 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggtggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
13236739 |
aacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggtagaa |
13236640 |
T |
|
| Q |
101 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236639 |
tagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgact |
13236540 |
T |
|
| Q |
201 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236539 |
attcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatttttt |
13236440 |
T |
|
| Q |
301 |
cccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236439 |
cccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttccctatg |
13236366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 254 - 617
Alignment:
| Q |
13 |
tgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttc----taagaggtggaatagaataa |
108 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
254 |
tgcgtgtgcccggggtagaagttttgtataaatgtatcgccatgctattaagt--attttgatttaagttcttttcgttgtaagaggtggaatagaataa |
351 |
T |
|
| Q |
109 |
cccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgactattcatag |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
352 |
cccggttgaagcgtaatgatcatacgcctgtaatgcattgtatgtcccataataggtcccattcttctaccctttcgggggagtcgatgactattcatag |
451 |
T |
|
| Q |
209 |
ctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataa |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
452 |
ctattaccttgacaccaaagaagagttcgacccaatgctttatttctgtcctagttgatcctgattcgacattagaagtatattgatttttcaccactaa |
551 |
T |
|
| Q |
309 |
ccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
374 |
Q |
| |
|
|||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
552 |
ccgaatacttttgtctgtaactactatatatttgattccatccataaatctattttcttccctatg |
617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 174 - 374
Target Start/End: Original strand, 10403965 - 10404169
Alignment:
| Q |
174 |
tctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctg-- |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10403965 |
tctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaataagagttcgacccaatgttttatttctgtcctagttgatactgat |
10404064 |
T |
|
| Q |
272 |
--attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttcc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10404065 |
taattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtttgtaaatattatatattttattccattcataaatctattttcttcc |
10404164 |
T |
|
| Q |
370 |
ctatg |
374 |
Q |
| |
|
||||| |
|
|
| T |
10404165 |
ctatg |
10404169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 249 - 374
Target Start/End: Complemental strand, 6352464 - 6352341
Alignment:
| Q |
249 |
tatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattcca |
348 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6352464 |
tatttctgtcctagttgatcct-attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattcca |
6352367 |
T |
|
| Q |
349 |
ttcataaatctattttcttccctatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6352366 |
ttcataaatctattttcttccctatg |
6352341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 169 - 374
Target Start/End: Complemental strand, 42203482 - 42203278
Alignment:
| Q |
169 |
attcttctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatc |
268 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42203482 |
attcttttatcctttattgggagtcgatgactattcatagctattaccttgacatcaaagaagagttcgacccaatgttttatttctatcctagttgatc |
42203383 |
T |
|
| Q |
269 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
368 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42203382 |
ctgattcgacattaaaagtatattgaattttt-acaataaccgaacacttttgtctgtaaatattgcatatattattccattcataaatctatttttttc |
42203284 |
T |
|
| Q |
369 |
cctatg |
374 |
Q |
| |
|
| |||| |
|
|
| T |
42203283 |
catatg |
42203278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 95 - 358
Target Start/End: Complemental strand, 198128 - 197865
Alignment:
| Q |
95 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcg |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||| |||| |||||||| ||||||||||| ||| || ||||| |
|
|
| T |
198128 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtatggcccagaataggtcctattcttctaccttttccaggtagtcg |
198029 |
T |
|
| Q |
195 |
atgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattga |
294 |
Q |
| |
|
||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
198028 |
atggctattcacagctaccaccttaacaccaaagaagagttcgacccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattga |
197929 |
T |
|
| Q |
295 |
ttttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatc |
358 |
Q |
| |
|
|| ||||||||||| |||| |||||| |||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
197928 |
ttctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatccataaatc |
197865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 95 - 350
Target Start/End: Complemental strand, 256562 - 256308
Alignment:
| Q |
95 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcg |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| | || | |||| |||||||| ||||||||||| ||| || ||||| |
|
|
| T |
256562 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtacggcccagaataggtcctattcttctaccttttccaggtagtcg |
256463 |
T |
|
| Q |
195 |
atgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattga |
294 |
Q |
| |
|
||| ||||||| ||||| ||||| | ||||| ||||||| || |||||| |||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
256462 |
atggctattcacagctaccaccttaat-ccaaagaagagtttgaaccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattga |
256364 |
T |
|
| Q |
295 |
ttttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccatt |
350 |
Q |
| |
|
|| ||||||||||| |||| |||||| |||||||||| ||| ||||| |||||||| |
|
|
| T |
256363 |
ttctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatt |
256308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 40231035 - 40230933
Alignment:
| Q |
270 |
tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgt-aaatattgcatattttattccattcataaatctattttctt |
367 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| | ||||| ||||||| ||| | ||| |||||||||||||| |
|
|
| T |
40231035 |
tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt |
40230936 |
T |
|
| Q |
368 |
ccc |
370 |
Q |
| |
|
||| |
|
|
| T |
40230935 |
ccc |
40230933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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