View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4566_high_3 (Length: 352)
Name: NF4566_high_3
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4566_high_3 |
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| [»] chr5 (5 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 24893857 - 24893516
Alignment:
| Q |
11 |
caaaggggggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893857 |
caaaggggggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcg |
24893758 |
T |
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| Q |
111 |
gttcatttggaactgtatatgaaggaatttctgagtaagtgttgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgtta |
210 |
Q |
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| T |
24893757 |
gttcatttggaactgtatatgaaggaatttctgagtaagtgttgccctctttacttgtgtcttttctcgtttctatcatttgaattttcatagcatgtta |
24893658 |
T |
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| Q |
211 |
aattaacagaaaattactttcaccttctacttctacttaccactcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttca |
310 |
Q |
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| T |
24893657 |
aattaacagaaaattactttcaccttctacttctacttaccactcatcaaaaactctaaaatgagtttcattacaccccacaacattacaccccttttca |
24893558 |
T |
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| Q |
311 |
aatcttgtatgtggaggctttagtgcatcgagcttcgcagtt |
352 |
Q |
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| T |
24893557 |
aatcttgtatgtggaggctttagtgcatcgagcttcgcagtt |
24893516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 24922767 - 24922635
Alignment:
| Q |
19 |
ggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcattt |
118 |
Q |
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| T |
24922767 |
ggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgtaattactcctgggagttggcaaaagggtgagcttttgggccgtggttcattt |
24922668 |
T |
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| Q |
119 |
ggaactgtatatgaaggaatttctgagtaagtg |
151 |
Q |
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| T |
24922667 |
ggaactgtatatgaaggaatttctgagtaagtg |
24922635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 24998857 - 24998725
Alignment:
| Q |
19 |
ggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcattt |
118 |
Q |
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| T |
24998857 |
ggatactaggtcgaatagtatatctcctaatgtgagattgaagcctgtaattactcctgggagttggcaaaagggtgagcttttgggccgtggttcattt |
24998758 |
T |
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| Q |
119 |
ggaactgtatatgaaggaatttctgagtaagtg |
151 |
Q |
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| T |
24998757 |
ggaactgtatatgaaggaatttctgagtaagtg |
24998725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 24905676 - 24905545
Alignment:
| Q |
18 |
gggatactaggtcgaatagtatattttctaatgtgagattgaagtcacttattactcccgggagttggcaaaagggtgagcttttgggccgcggttcatt |
117 |
Q |
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|||||||| | |||||| ||| |||||||||| ||||||||| | || |||||||||| ||||||||| |||||||||| |||||||| | ||||| || |
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| T |
24905676 |
gggatacttgctcgaattgtacattttctaatctgagattgatgccagttattactcctgggagttgggaaaagggtgaacttttgggtagtggttcgtt |
24905577 |
T |
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| Q |
118 |
tggaactgtatatgaaggaatttctgagtaag |
149 |
Q |
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| T |
24905576 |
tggatttgtatatgaaggaatttctcagtaag |
24905545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 24904784 - 24904739
Alignment:
| Q |
145 |
gtaagtgttgccctctttacttgtgtcttttctcgtttctatcatt |
190 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| |||| |
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| T |
24904784 |
gtaagtgttgccctctttacttgtatcttatttcgtttctaccatt |
24904739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 35834 - 35695
Alignment:
| Q |
19 |
ggatactaggtcgaatagtatattttct-aatgtgagatt-gaagtcactta--ttactcccgggagttggcaaaa-gggtgagctttt-gggccgcggt |
112 |
Q |
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| T |
35834 |
ggatactaggtcgaatagtatatctccttaatgtgagatttgaagtcctgtaaattactcctgggagttggcaaaaagggtgagctttttgggccgtggt |
35735 |
T |
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| Q |
113 |
tcatttggaactgtatatg-aaggaatttctgagtaagtg |
151 |
Q |
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| T |
35734 |
tcatttggaactgtatatgtaaggaatttctgagtaagtg |
35695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 33023096 - 33023027
Alignment:
| Q |
83 |
tggcaaaagggtgagcttttgggccgcggttcatttggaactgtatatgaaggaatttctgagtaagtgt |
152 |
Q |
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| T |
33023096 |
tggcaaaagggtggctttttggggggtggttcatttggatctgtctatgaaggaatttctgagtaagtgt |
33023027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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