View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4566_low_1 (Length: 728)
Name: NF4566_low_1
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4566_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 19 - 716
Target Start/End: Complemental strand, 15595510 - 15594814
Alignment:
| Q |
19 |
accttgattcgtgaaatgtccttccatcacttaaatattcattcatcctgactttcatgctccataacattccacttcctgactcataggtctgacactt |
118 |
Q |
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| T |
15595510 |
accttgattcgtgaaatgtccttccatcacttaaatattcattcatcctgactttcatgctccataacattccacttcttgactcataggtctgacactt |
15595411 |
T |
|
| Q |
119 |
aagatttgggaggtgcggtcaatctgacagagtttggctaacttatgttgcttacttagttacctcataagaagttaacttcgtatacctcccaagagtt |
218 |
Q |
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| T |
15595410 |
aagattcgggaggtgcggtcactctgacagagtttggctaact-atgttgcttacttagttacctcataagaagttaacttcgtataccacccaagagtt |
15595312 |
T |
|
| Q |
219 |
tacttatcccctagttgcttaaattaacataccagtcatcagaatgtcatccattctaagcgttccaagtccttagttccatacataatccacttttttc |
318 |
Q |
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|||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
15595311 |
tacttatcacctagttgcttaacttaacgtactagtcatcagaatgtcatccattctaagcgttcaaagtccttagttccatacataatccactgttttc |
15595212 |
T |
|
| Q |
319 |
tgagtgcttactaattctatcccatatatgttgacttcctcatcctaagtttctctttatcctgtaaccttgaatctgcgttcaagagtataacttttct |
418 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15595211 |
tgagtgcttactaactctatcccatatatgttgacttcctcatcctaagtttctctttatcctgtaaccttgaatctgcgttcaggagtataacttttct |
15595112 |
T |
|
| Q |
419 |
ctgtatcacactcctacttctcaactacgacttctagtaacgtgtcagatcaatccttggatactcctgaatctttcagttttccacatacgaagtaccg |
518 |
Q |
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| T |
15595111 |
ctatatcacactcctgcttttcaactacggcttctagtacggtgtcagatcaatccttggatactcttgaatctttcacttttccacatacgaagtacta |
15595012 |
T |
|
| Q |
519 |
ttcaacaatgtgtccaacactattggggtactaaattttactcttaacatcactcgatgttccgcaggaacctatcttcaacttctcagtccatcggcca |
618 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15595011 |
ttcaacaatgtgtccaacactattggggtactccattttactcttaacatcactcgatgttccggaggaacctatcttcaacttctcagtccatcggcca |
15594912 |
T |
|
| Q |
619 |
ccttttcgcacttagcatttccataccatcacttgttctgagttctgacttcctgattcatctccattatacactttgttcctcctaggtcatattca |
716 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
15594911 |
ccttttggcactgagcatttccataccatcacttgttctgagttctgacttcctgattcatctccgttatacacttcgttcctcctaggtcatattca |
15594814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 373 - 548
Target Start/End: Complemental strand, 14734538 - 14734365
Alignment:
| Q |
373 |
ctttatcctgtaaccttgaatctgcgttcaagagtataacttttctctgtatcacactcctacttctcaactacgacttctagtaacgtgtcagatcaat |
472 |
Q |
| |
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||||||| |||||||||||||||| ||||| |||||||||||| || ||||||||| ||||||| ||||||||| || | | || || ||||| |||| |
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| T |
14734538 |
ctttatcatgtaaccttgaatctgggttcaggagtataactttactttgtatcacattcctact--tcaactacggctcccacgaaggtctcagaccaat |
14734441 |
T |
|
| Q |
473 |
ccttggatactcctgaatctttcagttttccacatacgaagtaccgttcaacaatgtgtccaacactattggggta |
548 |
Q |
| |
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|| |||||| || | ||| |||| ||||||||||||||| ||| || ||||||| | | ||||| | |||||||| |
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| T |
14734440 |
ccctggatattcttaaattcttcaattttccacatacgaaatactgtccaacaatatatacaacaatgttggggta |
14734365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 14734728 - 14734580
Alignment:
| Q |
38 |
ccttccatcacttaaatattcattcatcctgactttcatgctccataacattccacttcctgactcataggtctgacacttaagatttgggaggtgcggt |
137 |
Q |
| |
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|||||||| ||||||||| |||| |||||| || |||||| | || ||||| ||||| | | | ||| || |||||||||||||| |||||| ||| | |
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| T |
14734728 |
ccttccattacttaaatactcatccatcctaaccttcatgttgtatgacatttcactttccgtcctataagtttgacacttaagattcgggaggcgcgat |
14734629 |
T |
|
| Q |
138 |
caatctgacagagtttggctaacttatgttgcttacttagttacctcataa |
188 |
Q |
| |
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| ||||||||||| || |||||||| ||||||||||| ||||| ||||| |
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| T |
14734628 |
c--tctgacagagtctgactaacttacattgcttacttaattaccccataa |
14734580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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