View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4566_low_3 (Length: 219)
Name: NF4566_low_3
Description: NF4566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4566_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 51213328 - 51213159
Alignment:
| Q |
34 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
133 |
Q |
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| T |
51213328 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
51213229 |
T |
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| Q |
134 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51213228 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatca |
51213159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 51157352 - 51157183
Alignment:
| Q |
34 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
133 |
Q |
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| T |
51157352 |
tacctctttcaactatttttccatgatgaatgacagcaatggtttcaacatttcttattgtacttaagcggtgagctacaacgatagttgtccggtttat |
51157253 |
T |
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| Q |
134 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatca |
203 |
Q |
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| T |
51157252 |
cattattctctccaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatca |
51157183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 51146230 - 51146061
Alignment:
| Q |
34 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
133 |
Q |
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| T |
51146230 |
tacctctttcaactatttttccttgatgaatgacagcaattgtatcaacatttcttatagtgctcaagcggtgtgctacaacgatagtcgtccggtttat |
51146131 |
T |
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| Q |
134 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatca |
203 |
Q |
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| T |
51146130 |
cattattctgttcaatgcctcttgtacaattctctcagattctgcatcaagggcacttgtagcttcatca |
51146061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 29936847 - 29936989
Alignment:
| Q |
61 |
gaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagggtctcttgtac |
160 |
Q |
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| T |
29936847 |
gaatgacagcaatggtatcaacatttctgattgtacttaagcggtgagctacgacgattgtcgtccggtttatcattattctttccaatgcctcttgtac |
29936946 |
T |
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| Q |
161 |
tactctttcagattctgcatcaagggcacttgttgcttcatca |
203 |
Q |
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| T |
29936947 |
aattctctcagattctgcatcaagggcacttgtagcttcatca |
29936989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 51200150 - 51199998
Alignment:
| Q |
50 |
ttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttatcataattctgtccagg |
149 |
Q |
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| T |
51200150 |
ttttccttgatgaataacggcaatggtatcagcattctttattgtactcaaacggtgagctacaatcacagttgttcggtttaccattactctatccaat |
51200051 |
T |
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| Q |
150 |
gtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatc |
202 |
Q |
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| T |
51200050 |
gcctcttgtacaattctctcagattcagcatcaagcgcacttgtagcttcatc |
51199998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 49736719 - 49736887
Alignment:
| Q |
34 |
tacctttttctactacttttccttcgtgaataacagcaatgatatcagcgttccttattgtgcttaggcggtgagctacaatgatggttgttcggtttat |
133 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
49736719 |
tacctttttctactacttttccttggtgaataacggcaatgatatcagcattccttattgtgcttaggcggtgggctacaatgatcattgttcggtttat |
49736818 |
T |
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| Q |
134 |
cataattctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatc |
202 |
Q |
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||||||||| || || ||||||||||| |||||||| || ||||| ||||||||||||||||||||||| |
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| T |
49736819 |
cataattctttctagcgtctcttgtaccactctttccgactctgcgtcaagggcacttgttgcttcatc |
49736887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 38566397 - 38566449
Alignment:
| Q |
150 |
gtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatc |
202 |
Q |
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| T |
38566397 |
gtctcttgtactaccctttcagattttgcatcaagtgcacttgtagcttcatc |
38566449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 38525248 - 38525313
Alignment:
| Q |
138 |
attctgtccagggtctcttgtactactctttcagattctgcatcaagggcacttgttgcttcatca |
203 |
Q |
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| T |
38525248 |
attctatccagagcctcttgcaccaccctttcagattctgcatcaagtgcacttgtagcttcatca |
38525313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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