View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-1 (Length: 899)
Name: NF5291-Insertion-1
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 105 - 758
Target Start/End: Complemental strand, 44590074 - 44589421
Alignment:
| Q |
105 |
ctcaatattccactttagcaacgtaacatcacaattggcccctatattgtacacgaaccaaccatttttgttcaacaacacacccatttactctcgtcaa |
204 |
Q |
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| T |
44590074 |
ctcaatattccattttagcaacgtaacatcacaattggccccaatattgtacacgaaccaaccatttttgttcaacaacac-cccatttactttcgtcaa |
44589976 |
T |
|
| Q |
205 |
ttaataagtcgatatttgcaatttgtggctgatgtaggcaacccaataaataaagcctatttatgcgtcatgtgtttcaacttttaggagactatacccc |
304 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44589975 |
ttaataagtcaatatttgcaatttgtggctgatgtaggtaacccaataaataaagcctatttatgcgtcatgtgtttcaacttttaggagactatacccc |
44589876 |
T |
|
| Q |
305 |
aaatctttagttggactttggatattaattagtggcctcccgtgattcctttagctttatcataattgaattactgtttggatttgctttgatttgttgg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44589875 |
aaatctttagttggactttggatattaattagtggcctcccgtgattcctttagctttatcataattgaattactgtttggatttgctttgatttgttgg |
44589776 |
T |
|
| Q |
405 |
gttatcacataaagattggatgaattaatttgccattggttaatccaagcatcaaaggtactccatacaaaaataaagaagagtgttacctattagatat |
504 |
Q |
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| T |
44589775 |
gttatcacataaagattggatgaattaatttgccattggttaatccaagcatcaaaggtactccatacaaaaataaagaagagtgttacctattagatat |
44589676 |
T |
|
| Q |
505 |
agttagtgaggttatttgtgttacaagtaacagtgtagttagttgagaatgtgttataaacataaatatcatgcctatac-nnnnnnnnaaggatgccta |
603 |
Q |
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| T |
44589675 |
agttagtgaggttatttgtgttacaagtaacagtgtagttagttgagaatgtgttataaacataaatatcatgcctatactttttttttaaggatgccta |
44589576 |
T |
|
| Q |
604 |
tagaagnnnnnnnnnttcatccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgata-ttttta |
702 |
Q |
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| T |
44589575 |
tagaaagaaaaaaaaatcatccctaattactgctattgttactattcttgttttccttcataagtctaatattactattatattcatctgatatttttta |
44589476 |
T |
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| Q |
703 |
tttatacannnnnnngttcttttaagaataacaactaatttctagcatttgttact |
758 |
Q |
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|||||| | |||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
44589475 |
tttatata-atttttgttcttttaacaataataactaatttctagcatttattact |
44589421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 770 - 858
Target Start/End: Complemental strand, 44589017 - 44588928
Alignment:
| Q |
770 |
tttattctaaagataaaacccaggtgcatttcattgcatatttttcgtatgat-ttttcacatgagattcactttttcttataagagtca |
858 |
Q |
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| T |
44589017 |
tttattctaaagataaaacccaggtgcatttcattgcatatttttcgtatgatttttttacatgagattcactttttcttataagagtca |
44588928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 621 - 700
Target Start/End: Original strand, 43982081 - 43982159
Alignment:
| Q |
621 |
catccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgatatttt |
700 |
Q |
| |
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|||| ||||||| |||| |||||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
43982081 |
catctctaattagtgctgctgttactatt-attttttccttcataagtctattattactattatattcatttgatatttt |
43982159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 708
Target Start/End: Complemental strand, 38341235 - 38341164
Alignment:
| Q |
637 |
tattgttactattcatgttttcctt-cataagtctaatattactattatattcatctgatatttttatttata |
708 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||| |||||||||| |||| || |||| |||||||||||| |
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| T |
38341235 |
tattgttactatt-atgttttcctttcataagtctattattactattctattaatttgatctttttatttata |
38341164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 44590146 - 44590100
Alignment:
| Q |
58 |
aatgtatttctggtctccaaaaccctctcctccctcgaaactccgaa |
104 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
44590146 |
aatgtatttctcatctccaaaaccctctcctccctcaaaactccgaa |
44590100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 852
Target Start/End: Original strand, 44618237 - 44618298
Alignment:
| Q |
792 |
ggtgcatttcattgcatatttttcgtatgatt-tttcacatgagattcactttttcttataa |
852 |
Q |
| |
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||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| | |||||| |
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| T |
44618237 |
ggtgcatttcattacatgtttttcgtatgattctttcacataagattcactttattttataa |
44618298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 704
Target Start/End: Complemental strand, 9641308 - 9641223
Alignment:
| Q |
621 |
catccctaattactgctattgttactattcatgtttt--ccttcataagtctaatattactattatattcatctgatatttttatt |
704 |
Q |
| |
|
|||||||||||| ||||||| |||||||| | |||| |||||||||||||| |||| |||||||||||| || | |||||||| |
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|
| T |
9641308 |
catccctaattaatgctattattactattattttttttcccttcataagtctataattaatattatattcatttgttctttttatt |
9641223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 704
Target Start/End: Complemental strand, 9626615 - 9626531
Alignment:
| Q |
622 |
atccctaattactgctattgttactattcatgtttt--ccttcataagtctaatattactattatattcatctgatatttttatt |
704 |
Q |
| |
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||||||||||||||| | | |||||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||||| |
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| T |
9626615 |
atccctaattactgccactattactattattttttttcccttcataagtctattattaatattatattcatttgttttttttatt |
9626531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 620 - 695
Target Start/End: Complemental strand, 3818839 - 3818764
Alignment:
| Q |
620 |
tcatccctaattactgctattgttactattcatgttttccttcataagtctaatattactattatattcatctgat |
695 |
Q |
| |
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||||||||||||||||||| | |||||||| |||||| ||||||||||||| || |||||||||| |||| |||| |
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| T |
3818839 |
tcatccctaattactgctactattactattattgtttttcttcataagtctattagtactattataatcatttgat |
3818764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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