View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-11 (Length: 75)

Name: NF5291-Insertion-11
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-11
NF5291-Insertion-11
[»] chr5 (4 HSPs)
chr5 (6-75)||(33758195-33758264)
chr5 (6-75)||(9436446-9436515)
chr5 (6-75)||(36607857-36607926)
chr5 (6-70)||(27632186-27632250)
[»] chr4 (8 HSPs)
chr4 (10-75)||(51407292-51407357)
chr4 (6-75)||(12888272-12888341)
chr4 (6-66)||(18357122-18357182)
chr4 (6-66)||(18431625-18431685)
chr4 (6-75)||(14792263-14792332)
chr4 (18-67)||(23533396-23533445)
chr4 (6-75)||(3926331-3926399)
chr4 (11-70)||(50589613-50589673)
[»] chr2 (2 HSPs)
chr2 (6-75)||(36592931-36593000)
chr2 (6-75)||(5051415-5051484)
[»] chr8 (3 HSPs)
chr8 (7-75)||(38149482-38149550)
chr8 (16-75)||(20519054-20519113)
chr8 (6-51)||(32919496-32919541)
[»] chr3 (5 HSPs)
chr3 (12-75)||(51056791-51056854)
chr3 (6-75)||(17113683-17113752)
chr3 (6-75)||(25498867-25498937)
chr3 (6-63)||(38258853-38258909)
chr3 (6-75)||(49358606-49358675)
[»] chr1 (1 HSPs)
chr1 (12-75)||(32946898-32946961)
[»] scaffold0005 (1 HSPs)
scaffold0005 (6-75)||(47399-47468)
[»] chr7 (5 HSPs)
chr7 (12-75)||(15121467-15121530)
chr7 (6-75)||(47589061-47589130)
chr7 (6-56)||(36934270-36934320)
chr7 (6-75)||(5892907-5892976)
chr7 (6-69)||(26199811-26199874)
[»] chr6 (2 HSPs)
chr6 (6-75)||(22696573-22696642)
chr6 (6-75)||(34502974-34503043)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 7e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-30
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 33758195 - 33758264
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33758195 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacctcatcca 33758264  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 9436446 - 9436515
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||| |||| ||||| ||||    
T  9436446 caccgacacctcctcacaccacaaaaaatgtggcttacatcaccacctcacacccccattacctcctcca 9436515  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 36607926 - 36607857
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| || |||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  36607926 caccgacatctcctcacactacaaaaaatgtggcctacatcaccacctcacaccaccatcaactcctcca 36607857  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 27632250 - 27632186
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctc 70  Q
    ||||| |||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||| ||||||    
T  27632250 caccgacacctcctcacaccacaaaaaacgtgacctacatcaccacctcataccaccagcacctc 27632186  T

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Target: chr4 (Bit Score: 66; Significance: 7e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-30
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 51407357 - 51407292
Alignment:
Q  10 ggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407357 ggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 51407292  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 12888272 - 12888341
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  12888272 caccgacacctcctcacaccaccaaaaatgtgacctacatcaccacatcacaccaccatcacctcctcca 12888341  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 18357122 - 18357182
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatca 66  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18357122 caccgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatca 18357182  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 18431685 - 18431625
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatca 66  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18431685 caccgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatca 18431625  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 14792263 - 14792332
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  14792263 caccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctcctcca 14792332  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 23533396 - 23533445
Alignment:
Q  18 ctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcac 67  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23533396 ctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcac 23533445  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 3926331 - 3926399
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| |||||||||||    
T  3926331 caccgccacctcctcacaccgccaaaaatgtggtctacat-accacctcacaccaccaacacctcatcca 3926399  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 50589613 - 50589673
Alignment:
Q  11 gcacctcctcacaccacc-aaaaatgtggcctacatcaccacttcacaccaccatcacctc 70  Q
    |||||||||||||||||| |||||  || |||| |||||||| |||||| |||||||||||    
T  50589613 gcacctcctcacaccaccaaaaaacatgacctatatcaccacctcacacaaccatcacctc 50589673  T

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Target: chr2 (Bit Score: 54; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36592931 - 36593000
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  36592931 caccggcccttcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacctcctcca 36593000  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 5051415 - 5051484
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||    
T  5051415 caccgacacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacacccatcacctcctcca 5051484  T

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Target: chr8 (Bit Score: 53; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 38149550 - 38149482
Alignment:
Q  7 accggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  38149550 accggcccttcctcacaccaccaaaaatgtggcgtacatcaccacttcacaccaccatcacctcctcca 38149482  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 20519054 - 20519113
Alignment:
Q  16 tcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||    
T  20519054 tcctcacaccaccaaaaatgtggtctacatcaccacctcacaccaccatcacctcctcca 20519113  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 32919541 - 32919496
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccac 51  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||    
T  32919541 caccggcccttcctcacaccaccaaaactgtggcctacatcaccac 32919496  T

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Target: chr3 (Bit Score: 52; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 51056854 - 51056791
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||    
T  51056854 cacctcctcacaccaccaaaaatgtggcctacatcgccacctcacaccaccatcacctcctcca 51056791  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 17113752 - 17113683
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  17113752 caccgacacctcctcacaccataaaaaacgtggcctacatcaccacctcacaccaccatcacctcctcca 17113683  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 25498867 - 25498937
Alignment:
Q  6 caccggcacctcctcacaccaccaaaa-atgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| ||||    
T  25498867 caccgacacctcctcacaccacaaaaaaatgtggcctacatcaccaccttacaccaccatcacctcctcca 25498937  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 38258853 - 38258909
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccacca 63  Q
    |||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||    
T  38258853 caccggcacctc-tcgcaccaccaaaaacgtggcctacatcaccacctcacaccacca 38258909  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 49358606 - 49358675
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| ||||| || ||||||| ||||| ||||||||||||||||| |||||||||||| ||||| ||||    
T  49358606 caccgacaccttctaacaccacaaaaaacgtggcctacatcaccacctcacaccaccataacctcctcca 49358675  T

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Target: chr1 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32946961 - 32946898
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  32946961 cacctcctcacaccaccaaaaatgtggcctacatcaccaccttacaccaccatcacctcctcca 32946898  T

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Target: scaffold0005 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 47468 - 47399
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  47468 caccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctcctcca 47399  T

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Target: chr7 (Bit Score: 48; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-19
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 15121530 - 15121467
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||    
T  15121530 cacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacccccatcaactcctcca 15121467  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 47589061 - 47589130
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  47589061 caccgacacctcctcacaccataaaaaatgtggcctacatcaccacctcacaccactatcatctcatcca 47589130  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 36934270 - 36934320
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcac 56  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  36934270 caccgacacctcctcacaccaccaaaaatgtgacctacatcaccacctcac 36934320  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 5892976 - 5892907
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| ||| |||||||||||| ||||| |||||| |||||||| | |||||||||||||||||| ||||    
T  5892976 caccgacacttcctcacaccacaaaaaacgtggccgacatcaccgcctcacaccaccatcacctcctcca 5892907  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 26199811 - 26199874
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacct 69  Q
    ||||| ||| |||||||||||||||||| || || || |||||||| |||||| ||||||||||    
T  26199811 caccgtcacatcctcacaccaccaaaaacgtagcatagatcaccacctcacacaaccatcacct 26199874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 22696573 - 22696642
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||| ||||    
T  22696573 caccagcacctcctcacaccaccaaaaacgtggcctacatcaccaccttgcaccaccatcacctcctcca 22696642  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 34503043 - 34502974
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| ||| |||||| ||||||||||| ||| |||||||| |||| ||||||||| |||||||| ||||    
T  34503043 caccgacacttcctcataccaccaaaaacgtgacctacatctccacctcacaccacgatcacctcctcca 34502974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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