View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-12 (Length: 630)

Name: NF5291-Insertion-12
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-12
NF5291-Insertion-12
[»] chr4 (7 HSPs)
chr4 (7-395)||(31030609-31030985)
chr4 (211-399)||(31020981-31021169)
chr4 (7-210)||(31020728-31020939)
chr4 (406-575)||(31021293-31021450)
chr4 (14-111)||(31496075-31496172)
chr4 (7-48)||(31488783-31488824)
chr4 (11-109)||(31501241-31501345)
[»] scaffold1749 (1 HSPs)
scaffold1749 (7-114)||(1003-1104)
[»] scaffold0428 (1 HSPs)
scaffold0428 (7-114)||(9764-9865)
[»] chr6 (4 HSPs)
chr6 (7-48)||(33265739-33265780)
chr6 (7-48)||(33274883-33274924)
chr6 (80-113)||(33403535-33403568)
chr6 (11-48)||(33412779-33412816)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 395
Target Start/End: Original strand, 31030609 - 31030985
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31030609 agtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 31030708  T
Q  107 tgaatatggtaaattgattatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaactatatattattaaaattcttata 199  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  31030709 tgaatatgctaaattgattatgaatgctgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaactatatattattaaaattcttata 31030808  T
Q  200 tattgtcatataaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagat-aaa 298  Q
    ||||||||||||||||||||||||||             ||       |||||||||||||||||||||||||||||| |||| | |||||||||| |||    
T  31030809 tattgtcatataaggacaaagcaatt-------------ct-------tataccccactcattttacaaagcaaaataaattggacaaaaagagataaaa 31030888  T
Q  299 tctttcaccttttcgactttttgaaaaatagaatgaataatttctaatgttaaatttctatttttgatacactaacttgcgtccatggaatttacct 395  Q
    |||||| ||||||  |||||||||||||||||||| |||||||||||| | |  ||| ||||||||||| ||||||||| || | ||| ||||||||    
T  31030889 tctttctccttttttactttttgaaaaatagaatgcataatttctaatataatttttttatttttgatatactaacttgtgttcttggcatttacct 31030985  T

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Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 211 - 399
Target Start/End: Original strand, 31020981 - 31021169
Alignment:
Q  211 aaggacaaagcaatttcataattcgatcctcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagataaatctttcaccttt 310  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31020981 aaggacaaagcaatttcattattcgatccgcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagataaatctttctccttt 31021080  T
Q  311 tcgactttttgaaaaatagaatgaataatttctaatgttaaatttctatttttgatacactaacttgcgtccatggaatttaccttaaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31021081 tcgactttttgaaaaatagaatgaataatttctaatgttaaatttctatttttgatacactaacttgcgtccatggaatttaccttaaa 31021169  T

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Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 31020728 - 31020939
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31020728 agtatcttcgcctctaaaggtgacaaacacatcataataattcttcctccttggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 31020827  T
Q  107 tgaatatggtaaattgattatgaatactgagttcctatgaaattatcagtggtgct-------tctcaagtctcaactatatattattaaaattctt-at 198  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||    
T  31020828 tgaatatgctaagttgattatgaatactgagttcctatgaaattatcagtggtgcttctcaagtctcaagtctcaactatatattattaaaattcttaat 31020927  T
Q  199 atattgtcatat 210  Q
    |||||| |||||    
T  31020928 atattgccatat 31020939  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 406 - 575
Target Start/End: Original strand, 31021293 - 31021450
Alignment:
Q  406 tggtagtaggaattttaggattcataacaaataaagataagacaggtggtaagtgaaaccaaatatcatggataatgaaaaatacctgttccattttcaa 505  Q
    ||||||||||||||| ||||||||||||||   ||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||| |||| ||||||    
T  31021293 tggtagtaggaattt-aggattcataacaat--aagataagacaagtggtaagtg-aaccaaatatcat-gataatg-aaaatacctg-tccaatttcaa 31021385  T
Q  506 acaaaaggaagaaagacaatgaaaatgtataggaaaattgtattttattattattaataggcaaaagcaa 575  Q
    |||||| |||| |||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||    
T  31021386 acaaaa-gaag-aagacaatgaaaatgtgtagg-aaattgta-tttattattattaata-gcaaaagcaa 31021450  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 31496172 - 31496075
Alignment:
Q  14 tcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatctgaat 111  Q
    |||||||| |||||||| ||||||||||||| |||  |||||| |||| ||| ||  ||||||||||||| |||||||||||||||||||||||||||    
T  31496172 tcacctctaaaggtgacaaacacgtcataatgattgctcctccttggcgatgtcactagagctgaagaagtggagttgctgctgctagccatctgaat 31496075  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 31488824 - 31488783
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataatt 48  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31488824 agtatcttcacctctgaaggtgacaaacacgtcataataatt 31488783  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 31501345 - 31501241
Alignment:
Q  11 tcttcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccata------agagctgaagaagaggagttgctgctgctagcca 104  Q
    ||||||||||| || ||||| ||| | ||||||||||||||||||| ||||| || || |      ||||| ||||||||||||||| ||||||||||||    
T  31501345 tcttcacctctaaaagtgacaaacgcatcataataattcttcctccttggcagtgtcacagtcacaagagccgaagaagaggagttgttgctgctagcca 31501246  T
Q  105 tctga 109  Q
    |||||    
T  31501245 tctga 31501241  T

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Target: scaffold1749 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 1003 - 1104
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    |||||||||||||||||||||||| |||||||||||| ||   || |||| |||||| | ||  |||||    | ||| |||||||||||||||||||||    
T  1003 agtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagc---cgtagacgagttgctgctgctagccatc 1096  T
Q  107 tgaatatg 114  Q
    ||||||||    
T  1097 tgaatatg 1104  T

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Target: scaffold0428 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 9764 - 9865
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataattcttcctccctggcaatgccataagagctgaagaagaggagttgctgctgctagccatc 106  Q
    |||||||||||||||||||||||| |||||||||||| ||   || |||| |||||| | ||  |||||    | ||| |||||||||||||||||||||    
T  9764 agtatcttcacctctgaaggtgacaaacacgtcataacaa---tttctccttggcaaaggcaccagagc---cgtagacgagttgctgctgctagccatc 9857  T
Q  107 tgaatatg 114  Q
    ||||||||    
T  9858 tgaatatg 9865  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33265739 - 33265780
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataatt 48  Q
    |||||||||||||||||||||||| || || |||||||||||    
T  33265739 agtatcttcacctctgaaggtgacaaatacatcataataatt 33265780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33274883 - 33274924
Alignment:
Q  7 agtatcttcacctctgaaggtgacgaacacgtcataataatt 48  Q
    |||||||||||||||||||||||| || || |||||||||||    
T  33274883 agtatcttcacctctgaaggtgacaaatacatcataataatt 33274924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 33403535 - 33403568
Alignment:
Q  80 gaagaggagttgctgctgctagccatctgaatat 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  33403535 gaagacgagttgctgctgctagccatctgaatat 33403568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 33412779 - 33412816
Alignment:
Q  11 tcttcacctctgaaggtgacgaacacgtcataataatt 48  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  33412779 tcttcacctctgaaggtgacaaacacatcataataatt 33412816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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