View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-14 (Length: 531)
Name: NF5291-Insertion-14
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Complemental strand, 37635422 - 37634901
Alignment:
| Q |
8 |
cctactactagtgtgaagagattattggcttggccccatcctccattttgttcggttgtgttaaactccaatgagagtgtgtgactaatttggaccttac |
107 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37635422 |
cctactactagtgtgaagagattattggtttggccccatcctccattttattcggttgtgttaaactccaatgagagtgtgtgactaatttggaccttat |
37635323 |
T |
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| Q |
108 |
tagtattggcgttctcattaggttagggaccataatgaggcnnnnnnn-gctaagattatattgttgtggttgtattacctttatggattannnnnnnct |
206 |
Q |
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| T |
37635322 |
tagtattggcgttctcattaggttatggaccataatgaagcttttttttgctaagattatattgttgtggttgcattacctttatggattttttttttct |
37635223 |
T |
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| Q |
207 |
ctttaccaagggttgtttatgtgttggtcccttaggttaatggacattgtgtgctattctaactcgctttatactcttcagttgttcatagagcatttaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37635222 |
ctttaccaagggttgtttatgtgttggtcccttaggttaatggacattgtgtgctattctaactcgctttatactcttcagttgttcatagagcatttaa |
37635123 |
T |
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| Q |
307 |
atgttcactatgtcaataagatatatacgtgatatcaagaattcgatacttagatattgaagaatgaacttgggtcacattcttcaggagggacaactct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
37635122 |
atgttcactatgtcaataagatatatacgtgatatcaagaattcgatacttagatattgaagaatgaacttgggttacattcttcagga-ggacaactct |
37635024 |
T |
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| Q |
407 |
tttgctgattggttagctaaggtcgagaccataagtaacatggaatttccttcatgcttgatgcccctcgaaagatggttgtctatcttgttaaccgata |
506 |
Q |
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||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
37635023 |
tttgctgattgtttagctaa-gtcgagaccataagtagcatggaatttccttcatgcttgatgcccctagaaagat-gtcgtctatcttgttaaccgata |
37634926 |
T |
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| Q |
507 |
gcacaaatgtggcattccttagttg |
531 |
Q |
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| T |
37634925 |
gcacaaatgtggcattccttagttg |
37634901 |
T |
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