View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-15 (Length: 434)
Name: NF5291-Insertion-15
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 45386609 - 45386762
Alignment:
| Q |
8 |
cctttcacaaccaccatatgagattcgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcac |
107 |
Q |
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| T |
45386609 |
cctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcac |
45386708 |
T |
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| Q |
108 |
aatgcatgaaaattctcagcaaaatctctgctggaggcggtggagttgcagcag |
161 |
Q |
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| T |
45386709 |
aatgcatgaaaactctcagcaaaatctctgctggaggcggtggagttgcagcag |
45386762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 45390978 - 45391114
Alignment:
| Q |
8 |
cctttcacaaccaccatatgagattcgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcac |
107 |
Q |
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||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
45390978 |
cctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttcac |
45391077 |
T |
|
| Q |
108 |
aatgcatgaaaattctcagcaaaatctctgctggagg |
144 |
Q |
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| T |
45391078 |
aatgcatgaaaactttcagcaaaatctctgccggagg |
45391114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 45386947 - 45387035
Alignment:
| Q |
346 |
gttatcattaaaaacctctcccatggcttcaagtttcacaaaaggaatctgcctctaagataagcttcgtgcaactatcacttatgccg |
434 |
Q |
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| T |
45386947 |
gttatcattagaaacctctcccatggcttcaagtttcacaaaaggaatctgcctctaagataagcttcgtgcaactatcacttatgccg |
45387035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 734586 - 734722
Alignment:
| Q |
8 |
cctttcacaaccaccatatgagattcgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttcac |
107 |
Q |
| |
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||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
734586 |
cctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttcac |
734685 |
T |
|
| Q |
108 |
aatgcatgaaaattctcagcaaaatctctgctggagg |
144 |
Q |
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|||||||||||| | |||||||||||||||| ||||| |
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| T |
734686 |
aatgcatgaaaactttcagcaaaatctctgccggagg |
734722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 40578165 - 40578224
Alignment:
| Q |
58 |
acctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgcatgaa |
117 |
Q |
| |
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|||||||||| |||| | ||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
40578165 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaa |
40578224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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