View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5291-Insertion-16 (Length: 447)
Name: NF5291-Insertion-16
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-16 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Complemental strand, 34772661 - 34772218
Alignment:
| Q |
8 |
ctattaaatgtaaataatagtttatatnnnnnnnntatctcatagcaactgtacaaatataataatgatatatagagccatgagatcaagaattttatgc |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34772661 |
ctattaagtgtaaataatagtttatataaaaaaaatatctcatagcaactgtacaaatataataatgatatatagagccatgaaatcaagaattttatgc |
34772562 |
T |
|
| Q |
108 |
atgtggtcgagtttgaatctagatttaatgactccacaattgttgcacttgtccaattgccttagaaaatctgttaagtttcactcattaattaaggatt |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34772561 |
atgtggttgagtttgaatctagatttaatgactccataattgttgcacttgtccaattgccttagaaaatctgttaagtttcactcattaattaaggatt |
34772462 |
T |
|
| Q |
208 |
gtccttatcttattttaggtctggacttttgtgtgtatttttaaatatggtctaat----taatggcaaaaaacaaactttacccattaagtttccttgt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34772461 |
gtccttatcttattttaggtctggacttttgtgtgtatttttaaatatggtctaattaattaatggcaaaaaacaaactttacccattaagtttccttgt |
34772362 |
T |
|
| Q |
304 |
gcatgtatcctatctcacacacagccaaatcgaattataactttgaaataaaggaaaaacaccagctcaacttattccctttttacaaaacaaaattcca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34772361 |
gcatgtatcctatctcacacacagccaaatcgaattataactttgaaataaaggaaaaacaccagctcaacttattccctttttacaaaacaaaattcca |
34772262 |
T |
|
| Q |
404 |
caaaagtgaagaatctttgtatatttctcctaatctcttttttg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34772261 |
caaaagtgaagaatctttgtatatttctcctaatctcttttttg |
34772218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3645 times since January 2019
Visitors: 8709