View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-17 (Length: 392)
Name: NF5291-Insertion-17
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-17 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 176 - 384
Target Start/End: Complemental strand, 77108 - 76900
Alignment:
| Q |
176 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagatnnnnnnnnnnnnnnnntgattct |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
77108 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaaaagcacaaaaaatgattct |
77009 |
T |
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| Q |
276 |
tcaacagacagcactttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaatt |
375 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77008 |
tcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaatt |
76909 |
T |
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| Q |
376 |
aaacacttt |
384 |
Q |
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||||||||| |
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| T |
76908 |
aaacacttt |
76900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 77277 - 77172
Alignment:
| Q |
7 |
actaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatcattagtataaaataatggtg |
106 |
Q |
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| T |
77277 |
actaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatcattagtataaaataatggtg |
77178 |
T |
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| Q |
107 |
gtgact |
112 |
Q |
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|||||| |
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| T |
77177 |
gtgact |
77172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 40889176 - 40889384
Alignment:
| Q |
176 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagaagaagatnnnnnnnnnnnnnnnntgattct |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
40889176 |
catttacattagtacaagtacatttttaaccgttactttgaaatgcaaacagtgaaggtaaaaagtgagatgaagataaaaaagcacaaaaaatgattct |
40889275 |
T |
|
| Q |
276 |
tcaacagacagcactttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaatt |
375 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889276 |
tcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaatt |
40889375 |
T |
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| Q |
376 |
aaacacttt |
384 |
Q |
| |
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||||||||| |
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| T |
40889376 |
aaacacttt |
40889384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 40889007 - 40889112
Alignment:
| Q |
7 |
actaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatcattagtataaaataatggtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889007 |
actaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcacataacaaacaacatcattagtataaaataatggtg |
40889106 |
T |
|
| Q |
107 |
gtgact |
112 |
Q |
| |
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|||||| |
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| T |
40889107 |
gtgact |
40889112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28271451 - 28271513
Alignment:
| Q |
10 |
aaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaaccttcaca |
72 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||||| |
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| T |
28271451 |
aaacccattagaccaatgcttcctcctccataaactagatcaatatttcttgacaccttcaca |
28271513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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