View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-18 (Length: 313)
Name: NF5291-Insertion-18
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-18 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 32804787 - 32804476
Alignment:
| Q |
8 |
cgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagc |
107 |
Q |
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| T |
32804787 |
cgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcagc |
32804688 |
T |
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| Q |
108 |
gcttaaggaagca-------tgagagggagaagaaagggaacagtgaaaggttcattttcattttaatctcggccattgattttttacatgcctcccact |
200 |
Q |
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| T |
32804687 |
gcttaaggaagcagaaaacgtgagagggagaagaaagggaacagtgaaaggttcatttacattttaatctcggccattgattttttacatgcctgccact |
32804588 |
T |
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| Q |
201 |
tgtcatacatctaagaaagggattagtggactgttgtttatcttatttgtttcgtcaagtagtttaatgacttaaataatactccctccttcttataata |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
32804587 |
tgtcatacatctaagaaagggattattggactgttgtttatcttatttgtttggtcaagtag-ttaatgacttaaataatactccattcttcttataata |
32804489 |
T |
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| Q |
301 |
attgagtattgtg |
313 |
Q |
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| T |
32804488 |
attgagtattgtg |
32804476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 34153383 - 34153313
Alignment:
| Q |
9 |
gtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacgg |
82 |
Q |
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| T |
34153383 |
gtctctgttgttttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacgg |
34153313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 48167237 - 48167271
Alignment:
| Q |
54 |
aacaaagacacagtggtggtggatcacggcggagt |
88 |
Q |
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| T |
48167237 |
aacaaagacacggtggtggtggatcacggcggagt |
48167271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 7317751 - 7317846
Alignment:
| Q |
8 |
cgtctctattgtgttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcag |
106 |
Q |
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| T |
7317751 |
cgtctctgttgttttttctttcagatgttttatgagtaat---tagaacaaagacacggtggcggcggatcacggcagagtgattggtcttcatggcag |
7317846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 17037573 - 17037491
Alignment:
| Q |
21 |
ttttctttcagatgttttgtgagtaataagaagaacaaagacacagtggtggtggatcacggcggagtcattgaccttcacggcag |
106 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||| |||| || |||||||||| |||| |||| ||||| ||||| |
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| T |
17037573 |
ttttctttcagatgttttatgagtaata---agaacaaagacacggtggcggcggatcacggcagagtgattggtcttcatggcag |
17037491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 46654403 - 46654437
Alignment:
| Q |
54 |
aacaaagacacagtggtggtggatcacggcggagt |
88 |
Q |
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| T |
46654403 |
aacaaagacacagtggtggtggatcacggcagagt |
46654437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 1253239 - 1253273
Alignment:
| Q |
54 |
aacaaagacacagtggtggtggatcacggcggagt |
88 |
Q |
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| T |
1253239 |
aacaaagacacagtggtggtggatgacggcggagt |
1253273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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