View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5291-Insertion-19 (Length: 223)

Name: NF5291-Insertion-19
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5291-Insertion-19
NF5291-Insertion-19
[»] chr4 (9 HSPs)
chr4 (10-220)||(51407147-51407357)
chr4 (6-173)||(12888272-12888439)
chr4 (6-220)||(14792263-14792476)
chr4 (6-157)||(18357122-18357272)
chr4 (6-157)||(18431535-18431685)
chr4 (6-129)||(3926331-3926452)
chr4 (11-157)||(50589613-50589760)
chr4 (18-67)||(23533396-23533445)
chr4 (53-126)||(3915357-3915429)
[»] chr5 (4 HSPs)
chr5 (6-220)||(33758195-33758409)
chr5 (6-173)||(27632083-27632250)
chr5 (6-172)||(9436446-9436612)
chr5 (6-153)||(36607779-36607926)
[»] chr8 (3 HSPs)
chr8 (16-173)||(20519054-20519211)
chr8 (7-170)||(38149387-38149550)
chr8 (6-164)||(32919392-32919541)
[»] chr1 (6 HSPs)
chr1 (12-173)||(32946800-32946961)
chr1 (96-218)||(36057670-36057791)
chr1 (96-218)||(36058798-36058919)
chr1 (122-220)||(27109901-27109998)
chr1 (92-164)||(15115532-15115603)
chr1 (92-164)||(15140048-15140119)
[»] chr3 (5 HSPs)
chr3 (12-157)||(51056709-51056854)
chr3 (6-171)||(25498867-25499033)
chr3 (6-149)||(49358606-49358743)
chr3 (6-100)||(38258853-38258946)
chr3 (6-75)||(17113683-17113752)
[»] chr6 (2 HSPs)
chr6 (6-173)||(22696573-22696740)
chr6 (6-173)||(34502876-34503043)
[»] chr7 (5 HSPs)
chr7 (12-172)||(15121370-15121530)
chr7 (6-218)||(47589061-47589272)
chr7 (6-173)||(5892811-5892976)
chr7 (6-157)||(26199811-26199965)
chr7 (6-157)||(36934270-36934410)
[»] chr2 (2 HSPs)
chr2 (6-170)||(36592931-36593095)
chr2 (6-175)||(5051415-5051584)
[»] scaffold0005 (1 HSPs)
scaffold0005 (6-220)||(47255-47468)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 51407357 - 51407147
Alignment:
Q  10 ggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407357 ggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccaca 51407258  T
Q  110 ctaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaactaccat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51407257 ctaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcacccacaagaaagaaaacagccccactgcaactagcagtaccaaaactaccat 51407158  T
Q  210 catcacctcct 220  Q
    |||||||||||    
T  51407157 catcacctcct 51407147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 12888272 - 12888439
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |||| |||||| |||||||||| ||||    
T  12888272 caccgacacctcctcacaccaccaaaaatgtgacctacatcaccacatcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccac 12888371  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    | ||| |||||||||||||||||||||||| |||||| |||||||||||||| || |||| |||||||    
T  12888372 cgcacaaaaacaccagacaacctgtgttttactaacagccgcaaactcagcacccgcaaggaagaaaa 12888439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 14792263 - 14792476
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| |||||||||| ||||    
T  14792263 caccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccac 14792362  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaacta 205  Q
    ||||| ||  |||||| ||||||||||||||||||||  ||||||||||||| || |||| ||||||||| |  | | || |||| |||||||||||| |    
T  14792363 cacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatcgccgcggcta-cagtaccaaaacca 14792461  T
Q  206 ccatcatcacctcct 220  Q
    ||| |||||| ||||    
T  14792462 ccaccatcacatcct 14792476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 18357122 - 18357272
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| || |||||||||||||||||||| | |||     
T  18357122 caccgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaa-aaccat 18357220  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagca 157  Q
    ||||| ||||||||||||||||||| |||| |||||| | ||||||||||||    
T  18357221 cacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagca 18357272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 18431685 - 18431535
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| || |||||||||||||||||||| | |||     
T  18431685 caccgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaa-aaccat 18431587  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagca 157  Q
    ||||| ||||||||||||||||||| |||| |||||| | ||||||||||||    
T  18431586 cacacaaaaacaccagacaacctgtattttcctaacagctgcaaactcagca 18431535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 3926331 - 3926452
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| ||||||||||||| |||| |||| ||||| |||| | ||||    
T  3926331 caccgccacctcctcacaccgccaaaaatgtggtctacat-accacctcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccac 3926428  T
Q  106 cacactaaaacaccagacaacctg 129  Q
    ||||| ||||||||| ||||||||    
T  3926429 cacacaaaaacaccaaacaacctg 3926452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 50589613 - 50589760
Alignment:
Q  11 gcacctcctcacaccaccaaaaatg-tggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccaca 109  Q
    |||||||||||||||||||||||   || |||| |||||||| |||||| ||||||||||| | |||| | || ||||||  ||||||||| ||||||||    
T  50589613 gcacctcctcacaccaccaaaaaacatgacctatatcaccacctcacacaaccatcacctccttcacatatatctggatcaaaaggaaacaaccaccaca 50589712  T
Q  110 ctaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagca 157  Q
    |  |||||||| ||||| ||||| |||||||||  |||||||||||||    
T  50589713 cataaacaccaaacaacatgtgtatttctaacagtcgcaaactcagca 50589760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 23533396 - 23533445
Alignment:
Q  18 ctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcac 67  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23533396 ctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcac 23533445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 3915357 - 3915429
Alignment:
Q  53 tcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacactaaaacaccagacaac 126  Q
    ||||||||||| ||||||||||||| |||| |||| ||||| |||| | ||||||||| ||||||||| |||||    
T  3915357 tcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaac 3915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 33758195 - 33758409
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33758195 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacctcatccacaaagatctggatcggaaggaaacatccac 33758294  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaacta 205  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  33758295 cacactaaaacaccagacaacctgtgtttttctaacggccgcaaactcagtacccacaagaaagaaaacagcaccactgcagctaacagtaccaaaacta 33758394  T
Q  206 ccatcatcacctcct 220  Q
    |||||||||||||||    
T  33758395 ccatcatcacctcct 33758409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 27632250 - 27632083
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||| || ||| |||| ||||||||||||||||| ||||    
T  27632250 caccgacacctcctcacaccacaaaaaacgtgacctacatcaccacctcataccaccagcacctcctctacacagatctggatcggaaggaaacaaccac 27632151  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    ||||| ||||||||| ||||| |||| |||||||||| |||||||||||||| || ||||||||||||    
T  27632150 cacacaaaaacaccaaacaacttgtgcttttctaacagccgcaaactcagcacccgcaagaaagaaaa 27632083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 9436446 - 9436612
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||| |||| ||||| |||||| |||| |||||||||||||||||| |||    
T  9436446 caccgacacctcctcacaccacaaaaaatgtggcttacatcaccacctcacacccccattacctcctccacatagatctggatcggaaggaaacatacac 9436545  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaa 172  Q
    ||||| ||||||| ||| ||| ||||||||||||| | |||||||||||||| || |||| ||||||    
T  9436546 cacacaaaaacactagaaaacatgtgtttttctaagagccgcaaactcagcacccgcaaggaagaaa 9436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 36607926 - 36607779
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| || |||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| |||||| | || ||||| ||||||||||| ||||    
T  36607926 caccgacatctcctcacactacaaaaaatgtggcctacatcaccacctcacaccaccatcaactcctccacataaatctggattggaaggaaacaaccac 36607827  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactc 153  Q
    ||  | |||||| |||||||||||||||||||||||| || |||||||    
T  36607826 caagcaaaaacatcagacaacctgtgtttttctaacagccacaaactc 36607779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 20519054 - 20519211
Alignment:
Q  16 tcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacactaaaa 115  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||| ||||    
T  20519054 tcctcacaccaccaaaaatgtggtctacatcaccacctcacaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaaa 20519153  T
Q  116 caccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    | ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||    
T  20519154 ctccagacaacttgtgtttttctaacaaccgcaaactcagcacccacaaggaagaaaa 20519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 38149550 - 38149387
Alignment:
Q  7 accggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccacc 106  Q
    |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||| |||||    
T  38149550 accggcccttcctcacaccaccaaaaatgtggcgtacatcaccacttcacaccaccatcacctcctccatatagatctggatcggaaggaaacaaccacc 38149451  T
Q  107 acactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaaga 170  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||    
T  38149450 acacaaaaacaccagacaacatgtgtttttccaacaaccgcaaactcagcacccacaaggaaga 38149387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 32919541 - 32919392
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||          ||||||||| |||||| |||| ||||||||||||||||| ||||    
T  32919541 caccggcccttcctcacaccaccaaaactgtggcctacatcaccac----------catcacctcctccacatagatctggatcggaaggaaacaaccac 32919452  T
Q  106 cacactaaaacaccagaca-acctgtgtttttctaacaaccgcaaactcagcatccacaa 164  Q
    ||||| ||| ||||| ||| || |||||||||| ||||||||||||||||||| ||||||    
T  32919451 cacacaaaagcaccaaacacacatgtgtttttccaacaaccgcaaactcagcacccacaa 32919392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 32946961 - 32946800
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacact 111  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||     
T  32946961 cacctcctcacaccaccaaaaatgtggcctacatcaccaccttacaccaccatcacctcctccacatagatttggatcagaaggaaacaaccaccacaca 32946862  T
Q  112 aaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||| || |||| |||||||    
T  32946861 aaaacaccagacaacctgtgtttttctaacagctgcaaacttagcacccgcaaggaagaaaa 32946800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 36057791 - 36057670
Alignment:
Q  96 aaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagt 195  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| || | ||||||| || |    
T  36057791 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagcta-caat 36057693  T
Q  196 accaaaactaccatcatcacctc 218  Q
    |||||||| |||| |||||||||    
T  36057692 accaaaacaaccaccatcacctc 36057670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 36058919 - 36058798
Alignment:
Q  96 aaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagt 195  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| || | ||||||| || |    
T  36058919 aaacaaccatcacacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaacagcaccgccgcagcta-caat 36058821  T
Q  196 accaaaactaccatcatcacctc 218  Q
    |||||||| |||| |||||||||    
T  36058820 accaaaacaaccaccatcacctc 36058798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 27109901 - 27109998
Alignment:
Q  122 acaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaactaccatcatcacctcct 220  Q
    |||||||||||||||||||||  ||||||||||||| ||||||| ||||||| ||| || | ||||||| || || |||||| |||| |||||||||||    
T  27109901 acaacctgtgtttttctaacaggcgcaaactcagcaaccacaaggaagaaaatagcaccgccgcagcta-caatatcaaaaccaccaccatcacctcct 27109998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 15115603 - 15115532
Alignment:
Q  92 aaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaa 164  Q
    |||||| || ||||||||| ||||||||| ||| | | ||||||||||||| || ||||||||||| ||||||    
T  15115603 aaggaatcaaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaa 15115532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 15140119 - 15140048
Alignment:
Q  92 aaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaa 164  Q
    |||||| || ||||||||| ||||||||| ||| | | ||||||||||||| || ||||||||||| ||||||    
T  15140119 aaggaatcaaccaccacacaaaaacaccaaaca-cttatgtttttctaacatccacaaactcagcacccacaa 15140048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 51056854 - 51056709
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacact 111  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||| |||||| |||||||||| |||||| ||     
T  51056854 cacctcctcacaccaccaaaaatgtggcctacatcgccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccataca 51056755  T
Q  112 aaaacaccagacaacctgtgtttttctaacaaccgcaaactcagca 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  51056754 aaaacaccagacaacctgtgttgttctaacaaccgcaaactcagca 51056709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 25498867 - 25499033
Alignment:
Q  6 caccggcacctcctcacaccaccaaaa-atgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatcca 104  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| |||||| |||| ||||||||||||||||| |||    
T  25498867 caccgacacctcctcacaccacaaaaaaatgtggcctacatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaacca 25498966  T
Q  105 ccacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaa 171  Q
    |||| |  |||||||||| ||| ||||||||||||||| ||||||||||| ||||| |||| |||||    
T  25498967 ccacgcataaacaccagataacttgtgtttttctaacagccgcaaactcaacatccgcaaggaagaa 25499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 49358606 - 49358743
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| ||||| || ||||||| ||||| ||||||||||||||||| |||||||||||| ||||| |||||| ||       ||| ||||||||| ||||    
T  49358606 caccgacaccttctaacaccacaaaaaacgtggcctacatcaccacctcacaccaccataacctcctccacatag-------tcgaaaggaaacaaccac 49358698  T
Q  106 cacactaaaacaccagacaacctgtg-tttttctaacaaccgcaa 149  Q
    ||||| ||||||| ||||||| |||| ||||||||||| ||||||    
T  49358699 cacacaaaaacactagacaacttgtgctttttctaacacccgcaa 49358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 38258853 - 38258946
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaaca 100  Q
    |||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||  ||||| | |||| |||| ||||||||||| |||||    
T  38258853 caccggcacctc-tcgcaccaccaaaaacgtggcctacatcaccacctcacaccaccaaaacctccttcacatagatctggatcggaagaaaaca 38258946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 17113752 - 17113683
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcca 75  Q
    ||||| |||||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  17113752 caccgacacctcctcacaccataaaaaacgtggcctacatcaccacctcacaccaccatcacctcctcca 17113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 22696573 - 22696740
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||| |||||| |||| ||||||||||||||||| ||||    
T  22696573 caccagcacctcctcacaccaccaaaaacgtggcctacatcaccaccttgcaccaccatcacctcctccacatagatctggatcggaaggaaacaaccac 22696672  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    |||||  |||||||||| ||||||||||||||||||| |||||||||||||| || |||| |||||||    
T  22696673 cacacataaacaccagataacctgtgtttttctaacagccgcaaactcagcacccgcaaggaagaaaa 22696740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 34503043 - 34502876
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| ||| |||||| ||||||||||| ||| |||||||| |||| ||||||||| |||||||| ||||   |||| ||||| ||||||||||| | ||    
T  34503043 caccgacacttcctcataccaccaaaaacgtgacctacatctccacctcacaccacgatcacctcctccatgtagatctggattggaaggaaacaacgac 34502944  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| || |||| |||||||    
T  34502943 cacacaaaaacaacagacaacctgtgttttactaacaaccgcaaactcagcacccgcaaggaagaaaa 34502876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 15121530 - 15121370
Alignment:
Q  12 cacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacact 111  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||| | |||| |||||||||||||||||||||||||||     
T  15121530 cacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacccccatcaactcctccatatagatctggatcggaaggaaacatccaccacaca 15121431  T
Q  112 aaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaa 172  Q
    ||| ||||||||||||| ||||||||||| | |||||||||||||| || |||| ||||||    
T  15121430 aaagcaccagacaacctatgtttttctaagagccgcaaactcagcacccgcaaggaagaaa 15121370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 47589061 - 47589272
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||| |||| |||||||||| |||  |||||| ||||||||| |||||    
T  47589061 caccgacacctcctcacaccataaaaaatgtggcctacatcaccacctcacaccactatcatctcatccacatagacctggatcagaaggaaacgtccac 47589160  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaacta 205  Q
    ||||| ||||||||| ||||||||||||||||||| |  ||||||||||  | |||| || ||||||||||| || | ||| ||| |||||||||||| |    
T  47589161 cacacaaaaacaccaaacaacctgtgtttttctaaaagtcgcaaactcaatacccacgaggaagaaaacagcaccgccgcaacta-cagtaccaaaacca 47589259  T
Q  206 ccatcatcacctc 218  Q
    ||| |||||||||    
T  47589260 ccaccatcacctc 47589272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 5892976 - 5892811
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| ||| |||||||||||| ||||| |||||| |||||||| | |||||||||||||||||| |||||| |||| || ||||||||||||   ||||    
T  5892976 caccgacacttcctcacaccacaaaaaacgtggccgacatcaccgcctcacaccaccatcacctcctccacatagatctgaatcggaaggaaaa--ccac 5892879  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaa 173  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  5892878 cacacaaaaacaccagacaacctgtgtttttctaatagccgcaaactcagcatccgcaaggaagaaaa 5892811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 26199811 - 26199965
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| ||| |||||||||||||||||| || || || |||||||| |||||| ||||||||||  || ||| |||| ||||||||||||||||| ||||    
T  26199811 caccgtcacatcctcacaccaccaaaaacgtagcatagatcaccacctcacacaaccatcaccttctctacatagatctggatcggaaggaaacaaccac 26199910  T
Q  106 cacactaaaacaccagacaac---ctgtgtttttctaacaaccgcaaactcagca 157  Q
    ||||| |||||||||||||||   |||||||||||||||| ||||||||||||||    
T  26199911 cacacaaaaacaccagacaaccaactgtgtttttctaacagccgcaaactcagca 26199965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 36934270 - 36934410
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||           ||| |||||| |||| |  |||||||||||||||||||    
T  36934270 caccgacacctcctcacaccaccaaaaatgtgacctacatcaccacctcac-----------ctcctccacatagatcttaatcggaaggaaacatccac 36934358  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagca 157  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||||||||||    
T  36934359 cacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagca 36934410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 36592931 - 36593095
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| ||||||||||  |||    
T  36592931 caccggcccttcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaatcac 36593030  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaaga 170  Q
    ||||| ||||||||||||| | |||||||||| |||||||||||||||| || ||||||| ||||    
T  36593031 cacacaaaaacaccagacagcatgtgtttttccaacaaccgcaaactcaacacccacaaggaaga 36593095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 5051415 - 5051584
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| |||||| |||| ||||| ||||||||||| ||||    
T  5051415 caccgacacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacacccatcacctcctccacatagatctggattggaaggaaacaaccac 5051514  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaaca 175  Q
    ||||| ||||||||||||||  ||| ||||||||| | ||||||||||||||  | |||| |||||||||    
T  5051515 cacacaaaaacaccagacaatttgtatttttctaagagccgcaaactcagcacacgcaaggaagaaaaca 5051584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 47468 - 47255
Alignment:
Q  6 caccggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccac 105  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| |||||||||| ||||    
T  47468 caccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccac 47369  T
Q  106 cacactaaaacaccagacaacctgtgtttttctaacaaccgcaaactcagcatccacaagaaagaaaacagccccactgcagctagcagtaccaaaacta 205  Q
    ||||| ||  |||||| ||||||||||||||||||||  ||||||||||||| || |||| ||||||||| |  | | || |||| |||||||||||| |    
T  47368 cacacgaattcaccaggcaacctgtgtttttctaacagtcgcaaactcagcacccgcaaggaagaaaacatcatcgccgcggcta-cagtaccaaaacca 47270  T
Q  206 ccatcatcacctcct 220  Q
    ||| |||||| ||||    
T  47269 ccaccatcacatcct 47255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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