View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5291-Insertion-3 (Length: 792)
Name: NF5291-Insertion-3
Description: NF5291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5291-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 61 - 459
Target Start/End: Original strand, 7160494 - 7160892
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7160494 |
ttgtaggaagtcccgtgcatgtaatggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaattttgcttaccaa |
7160593 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaaggtgtgt |
260 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||| |
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| T |
7160594 |
catttcagagaattggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcttatagatatcatgttgttctttaagtaaggtgtgt |
7160693 |
T |
|
| Q |
261 |
gaatcaatcggaaaattgaagcatttaagatatcttaatttgtggcgttgcagagatttgggaagcatttctaaatccataagtaattttatttgcctac |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
7160694 |
gaatcaatcggaaaattgaagcatttaagatatcttaacttatggcgttgcagagatttgggaagcatttctaaatccgtaggtaattttgtttgcctac |
7160793 |
T |
|
| Q |
361 |
aaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaatttgagatatgttgatgttaaatttttgaaag |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
7160794 |
aaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaatttgagatatcttgatgttaaatttttaaaag |
7160892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 465 - 788
Target Start/End: Original strand, 7160935 - 7161255
Alignment:
| Q |
465 |
gtgtgtggtggtggaataagggtgttatttttgtaaactggttttctttgctaacaaatgttgttataatctctctacatcagtgtcgaggtttacaaca |
564 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||| | |
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| T |
7160935 |
gtgtgtcgtggtggaataatggtgttatttttgtaaactggttttctttgctcacaaatattgtgataatctctctacatcagtgttaaggtttacaata |
7161034 |
T |
|
| Q |
565 |
tctcccaccgtttgaacgtcttccattcttgaagtt-attcatttaaatttgcttgatgaattggagtatatgtattatgaaaagctcctttcgcctgaa |
663 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | | |||||||| ||||| ||||||||||||| |||||| |
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| T |
7161035 |
tctcccaccgttggaacgtcttccattcttgaagtttattcatttaaattcgctccttaa----gagtatatatattacgaaaagctccttttgcctgag |
7161130 |
T |
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| Q |
664 |
atattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatgacaatgatactgatg |
763 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
7161131 |
atattctttccatctttagagaggctccttttgtgcaagtgcaaaaagttgaggggatggtggaggttgggagctgatgtcaatgacaatgatactgata |
7161230 |
T |
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| Q |
764 |
actcgtcaaaatcacataatctctc |
788 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
7161231 |
actcgtcaaaatcacataatctctc |
7161255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 3918236 - 3918077
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
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|||| |||| |||||||||||||| | || ||||||| |||||||||||||| || |||||| ||||||| ||| |||||||||| ||||| | |||| |
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| T |
3918236 |
ttgtcggaaatcccgtgcatgtaatgttgcaaagtgaagctattggtttgttggagtcattgaatgcaagaaagatgcgaactttgattttgttgtccaa |
3918137 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacg |
220 |
Q |
| |
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| ||| |||| || ||| ||||||||| | | |||||| | |||||||||||||||||| |
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| T |
3918136 |
caattcagagagtatgaatgagaaggaattgtttgttatatcaaaattcaaatacttacg |
3918077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 749
Target Start/End: Complemental strand, 3917605 - 3917510
Alignment:
| Q |
654 |
ttcgcctgaaatattctttccgtctttagagaggctccttttatgcaagtgcaaaaagttgaggggatggtggaggatgggagatgatgtcaatga |
749 |
Q |
| |
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||||||||||| |||||| || | |||| |||| ||| || |||| || ||||| ||||||||||||||||||| |||| | |||||||||||||| |
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| T |
3917605 |
ttcgcctgaaacattcttcccatgtttaaagagtctctttatatggaaatgcaataagttgaggggatggtggaagatgagtgatgatgtcaatga |
3917510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 61 - 301
Target Start/End: Complemental strand, 3172902 - 3172662
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaa |
160 |
Q |
| |
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||||||| ||||| ||| ||||| | |||||||||||| ||||||||||||| | || ||||||||| || | |||||||||| ||||| || |||| |
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| T |
3172902 |
ttgtaggtagtccaatgcgtgtaatgttgaaaagtgatgatattggtttgttaaagtcggtggatgcaatcaggatgcgaactttgattttgttttccaa |
3172803 |
T |
|
| Q |
161 |
tatttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaa---ggtg |
257 |
Q |
| |
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|| || ||||| | |||| || |||||| | ||| |||||| |||||||||||||||||||||| | || | || ||||||||||| ||| | | |
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| T |
3172802 |
taattgggagacttggaatgaaaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttc |
3172706 |
T |
|
| Q |
258 |
tgtgaatcaatcggaaaattgaagcatttaagatatcttaattt |
301 |
Q |
| |
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||||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
3172705 |
tgtgattcaattggaaaattgaggcatttaagatatcttaattt |
3172662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 196 - 369
Target Start/End: Complemental strand, 3169195 - 3169022
Alignment:
| Q |
196 |
ttattttaaaattcaaatacttacgcgtcctaaaaatatcatgttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatct |
295 |
Q |
| |
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|||||| |||||||||||| ||||||||| | || ||||| |||||||||| |||| ||||||| ||||| | |||||||||||||||||||||||| |
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| T |
3169195 |
ttatttcaaaattcaaatatttacgcgtcttgaagctatcacattgttctttatgtaagttgtgtgattcaattgtaaaattgaagcatttaagatatct |
3169096 |
T |
|
| Q |
296 |
taatttgtggcgttgcagagatttgggaagcatttctaaatccataagtaattttatttgcctacaaacactaa |
369 |
Q |
| |
|
| | || ||| ||||||| ||||||| ||| ||||||||||| |||| | ||||| |||||||||||| |
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|
| T |
3169095 |
tgacttatggtactgcagaggagtgggaagtgtttttaaatccataactaatatggtttgcttacaaacactaa |
3169022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 3141242 - 3141081
Alignment:
| Q |
63 |
gtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttttcttaccaata |
162 |
Q |
| |
|
|||||||||||| ||||| ||| | ||||||| |||||||||||||| || || |||||| | ||| |||| |||||||||| ||||| | || || |
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| T |
3141242 |
gtaggaagtcccatgcatataatgttgaaaagggatgctattggtttcttggagtcattgagttcaaacaagatgcgaactttgattttgttgactgatt |
3141143 |
T |
|
| Q |
163 |
tttcggagaataggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtc |
224 |
Q |
| |
|
|||| || || ||| || |||||| ||| || |||| |||||||||||||||||||||| |
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|
| T |
3141142 |
tttcagaaaagttgaatgaaaaggaattattagtcatttcaaaattcaaatacttacgcgtc |
3141081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 3169330 - 3169240
Alignment:
| Q |
61 |
ttgtaggaagtcccgtgcatgtaacggtgaaaagtgatgctattggtttgttagaatcattggatgcaagcaagttgcgaactttaatttt |
151 |
Q |
| |
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|||||| ||||||| ||||| ||| | |||||| |||| ||||||||||||||| || |||||||||||| | |||| ||||| ||||| |
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|
| T |
3169330 |
ttgtagaaagtcccatgcatataatgatgaaaatggatgatattggtttgttagagtcggtggatgcaagcaggctgcgtactttgatttt |
3169240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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